RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 POMGNT1Q8WZA1 660 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 BORCS6Q96GS4 357 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 TUBB2BQ9BVA1 445 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 AP1M1Q9BXS5 423 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 MOV10L1Q9BXT6 1211 aaKnown RBP10.79□□□□□ -0.68
VPS53-206ENST00000570359 ZNF408Q9H9D4 720 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 VPS18Q9P253 973 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 PCDHA10Q9Y5I2 948 aa10.79□□□□□ -0.68
VPS53-206ENST00000570359 FOXN3O00409 490 aaPredicted RBP10.78□□□□□ -0.68
VPS53-206ENST00000570359 CEP104O60308 925 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 ACTR2P61160 394 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 KRT76Q01546 638 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 SP2Q02086 613 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 CASP8Q14790 479 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 NAB2Q15742 525 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 DPY19L2P1Q6NXN4 242 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 VPS36Q86VN1 386 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 VSIG10LQ86VR7 867 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 TAF4BQ92750 862 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 EDEM3Q9BZQ6 932 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 POTEB2H3BUK9 544 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 SOX5P35711 763 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 JAK3P52333 1124 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 SKIDA1Q1XH10 827 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 ADGRA3Q8IWK6 1321 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 XXYLT1Q8NBI6 393 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 NEK9Q8TD19 979 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 KRT12Q99456 494 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 FAM213AQ9BRX8 229 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 PLCB1Q9NQ66 1216 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 ANKFY1Q9P2R3 1169 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 SLC9A2Q9UBY0 812 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 IGSF9BQ9UPX0 1349 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 CD2APQ9Y5K6 639 aa10.78□□□□□ -0.68
VPS53-206ENST00000570359 LRRIQ4A6NIV6 560 aa10.77□□□□□ -0.68
VPS53-206ENST00000570359 USP2O75604 605 aaPredicted RBP10.77□□□□□ -0.68
VPS53-206ENST00000570359 TNFAIP3P21580 790 aa10.77□□□□□ -0.68
VPS53-206ENST00000570359 GALCP54803 685 aa10.77□□□□□ -0.68
VPS53-206ENST00000570359 EPC2Q52LR7 807 aa10.77□□□□□ -0.68
VPS53-206ENST00000570359 EAPPQ56P03 285 aaPredicted RBP10.77□□□□□ -0.68
VPS53-206ENST00000570359 C8orf74Q6P047 294 aa10.77□□□□□ -0.68
VPS53-206ENST00000570359 CATSPERGQ6ZRH7 1159 aa10.77□□□□□ -0.68
VPS53-206ENST00000570359 HDXQ7Z353 690 aa10.77□□□□□ -0.68
VPS53-206ENST00000570359 SULF1Q8IWU6 871 aa10.77□□□□□ -0.68
VPS53-206ENST00000570359 DHX38Q92620 1227 aaKnown RBP10.77□□□□□ -0.68
VPS53-206ENST00000570359 ZBTB10Q96DT7 871 aa10.77□□□□□ -0.68
VPS53-206ENST00000570359 APEX2Q9UBZ4 518 aa10.77□□□□□ -0.68
VPS53-206ENST00000570359 CSADQ9Y600 493 aa10.77□□□□□ -0.68
VPS53-206ENST00000570359 H2AFZP0C0S5 128 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 KCNA2P16389 499 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 MXI1P50539 228 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 SMTNP53814 917 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 POLGP54098 1239 aaPredicted RBP10.77□□□□□ -0.69
VPS53-206ENST00000570359 SNRNP35Q16560 246 aaKnown RBP10.77□□□□□ -0.69
VPS53-206ENST00000570359 CCDC70Q6NSX1 233 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 FOXR2Q6PJQ5 311 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.77□□□□□ -0.69
VPS53-206ENST00000570359 H2AFVQ71UI9 128 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 SND1Q7KZF4 910 aaKnown RBP eCLIP10.77□□□□□ -0.69
VPS53-206ENST00000570359 REPS2Q8NFH8 660 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 SYN2Q92777 582 aaPredicted RBP10.77□□□□□ -0.69
VPS53-206ENST00000570359 PPP1R16BQ96T49 567 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 FHDC1Q9C0D6 1143 aaPredicted RBP10.77□□□□□ -0.69
VPS53-206ENST00000570359 POLR3FQ9H1D9 316 aaPredicted RBP10.77□□□□□ -0.69
VPS53-206ENST00000570359 BTBD7Q9P203 1132 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 TBX20Q9UMR3 447 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 DOCK1Q14185 1865 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 IRF6O14896 467 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 PJA2O43164 708 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 PPP1R37O75864 691 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 TCP1P17987 556 aaKnown RBP10.77□□□□□ -0.69
VPS53-206ENST00000570359 CNGA1P29973 690 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 ADSSP30520 456 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 HOXA7P31268 230 aaPredicted RBP10.77□□□□□ -0.69
VPS53-206ENST00000570359 COPB2P35606 906 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 ACOT2P49753 483 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 GUCY2FP51841 1108 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 IRX3P78415 501 aaPredicted RBP10.77□□□□□ -0.69
VPS53-206ENST00000570359 TRADDQ15628 312 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 TRIM50Q86XT4 487 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 DCPSQ96C86 337 aaKnown RBP10.77□□□□□ -0.69
VPS53-206ENST00000570359 ARHGEF26Q96DR7 871 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 FAM212AQ96EL1 285 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 THAP2Q9H0W7 228 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 TMEM206Q9H813 350 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 KCND2Q9NZV8 630 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 DBR1Q9UK59 544 aaKnown RBP10.77□□□□□ -0.69
VPS53-206ENST00000570359 RAB21Q9UL25 225 aa10.77□□□□□ -0.69
VPS53-206ENST00000570359 SSC5DA1L4H1 1573 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 PHIPQ8WWQ0 1821 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 PSAPP07602 524 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 KRT5P13647 590 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 FERP16591 822 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 JAM2P57087 298 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 ZNF211Q13398 564 aaPredicted RBP10.76□□□□□ -0.69
VPS53-206ENST00000570359 RPS6KA1Q15418 735 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 SUPT20HL1Q3ZLR7 823 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 C2CD6Q53TS8 623 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 ZNF662Q6ZS27 426 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 PEX26Q7Z412 305 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms