RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 ZIM3Q96PE6 472 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 POP1Q99575 1024 aaKnown RBP9.5□□□□□ -0.89
LINC00558-201ENST00000569422 CELF4Q9BZC1 486 aaKnown RBP9.5□□□□□ -0.89
LINC00558-201ENST00000569422 DPH5Q9H2P9 285 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 AMACRQ9UHK6 382 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 LCMT1Q9UIC8 334 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 USP20Q9Y2K6 914 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 BRWD3Q6RI45 1802 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 FERP16591 822 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 APLP1P51693 650 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 BFSP1Q12934 665 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 XKR9Q5GH70 373 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 C1QTNF12Q5T7M4 302 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 PRPF38AQ8NAV1 312 aaKnown RBP9.5□□□□□ -0.89
LINC00558-201ENST00000569422 GOLGA5Q8TBA6 731 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 MORC4Q8TE76 937 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 SLC20A1Q8WUM9 679 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 CTNNBL1Q8WYA6 563 aaPredicted RBP9.5□□□□□ -0.89
LINC00558-201ENST00000569422 ARHGEF26Q96DR7 871 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 WNK4Q96J92 1243 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 INPP4AQ96PE3 977 aaPredicted RBP9.5□□□□□ -0.89
LINC00558-201ENST00000569422 GMLQ99445 158 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 THAP2Q9H0W7 228 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 LARSQ9P2J5 1176 aaKnown RBP9.5□□□□□ -0.89
LINC00558-201ENST00000569422 ZNRF3Q9ULT6 936 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 NRXN2Q9P2S2 1712 aa9.5□□□□□ -0.89
LINC00558-201ENST00000569422 ZNF536O15090 1300 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 FRMPD4Q14CM0 1322 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 IGSF9BQ9UPX0 1349 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 FOCADQ5VW36 1801 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 EIF3DO15371 548 aaKnown RBP eCLIP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 BUB1BO60566 1050 aaPredicted RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 ICAM1P05362 532 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 AARSP49588 968 aaKnown RBP eCLIP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 TNNC1P63316 161 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 MRPS9P82933 396 aaKnown RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 SPP2Q13103 211 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 MKRN4PQ13434 485 aaPredicted RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 TKFCQ3LXA3 575 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 CFAP58Q5T655 872 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 OR2W6PQ8NHA6 318 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 MYOZ2Q9NPC6 264 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 TMOD4Q9NZQ9 345 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 NOC2LQ9Y3T9 749 aaKnown RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 BACH1O14867 736 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 ATMINO43313 823 aaPredicted RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 SLC26A4O43511 780 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 ZEB2O60315 1214 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 ECM2O94769 699 aaPredicted RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 CALCAP01258 141 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 P4HBP07237 508 aaKnown RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 YWHABP31946 246 aaKnown RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 JAM2P57087 298 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 PPP3CAQ08209 521 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 MAPK7Q13164 816 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 IFI16Q16666 785 aaKnown RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 PUS10Q3MIT2 529 aaKnown RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 AADACL2Q6P093 401 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 LRRC31Q6UY01 552 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 PHLDB2Q86SQ0 1253 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 ARHGEF19Q8IW93 802 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 C10orf67Q8IYJ2 551 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 PPM1KQ8N3J5 372 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 JDP2Q8WYK2 163 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 RMDN3Q96TC7 470 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 STK33Q9BYT3 514 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 MAF1Q9H063 256 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 APEX2Q9UBZ4 518 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 PPP1R9AQ9ULJ8 1098 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 SIPA1L1O43166 1804 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 ARFGEF1Q9Y6D6 1849 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 C10orf71Q711Q0 1435 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 SART1O43290 800 aaKnown RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 ZBTB7AO95365 584 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 FGGP02679 453 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 RARRES1P49788 294 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 ZRSR2Q15696 482 aaKnown RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 ARHGEF16Q5VV41 709 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 ARHGAP27Q6ZUM4 889 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 HAUS6Q7Z4H7 955 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 SYTL5Q8TDW5 730 aaPredicted RBP9.49□□□□□ -0.89
LINC00558-201ENST00000569422 PIK3R5Q8WYR1 880 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 TELO2Q9Y4R8 837 aa9.49□□□□□ -0.89
LINC00558-201ENST00000569422 PCNTO95613 3336 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 TRIM66O15016 1216 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 QARSP47897 775 aaKnown RBP9.48□□□□□ -0.89
LINC00558-201ENST00000569422 VAMP7P51809 220 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 PAK2Q13177 524 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 EMBQ6PCB8 327 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 CLEC4DQ8WXI8 215 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 ZKSCAN4Q969J2 545 aaPredicted RBP9.48□□□□□ -0.89
LINC00558-201ENST00000569422 PSD3Q9NYI0 1048 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 CWC15Q9P013 229 aaKnown RBP9.48□□□□□ -0.89
LINC00558-201ENST00000569422 CTTNBP2NLQ9P2B4 639 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 AMFRQ9UKV5 643 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 ODF2LQ9ULJ1 636 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 NR2E1Q9Y466 385 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 RIPK3Q9Y572 518 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 CEP83Q9Y592 693 aa9.48□□□□□ -0.89
LINC00558-201ENST00000569422 PGRMC1O00264 195 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms