RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ZNF280BQ86YH2 543 aa18.3■□□□□ 0.52
CLK3-223ENST00000568488 SMC5Q8IY18 1101 aa18.3■□□□□ 0.52
CLK3-223ENST00000568488 TMTC2Q8N394 836 aa18.3■□□□□ 0.52
CLK3-223ENST00000568488 LINC01465Q8N7H1 131 aa18.3■□□□□ 0.52
CLK3-223ENST00000568488 CMASQ8NFW8 434 aaPredicted RBP18.3■□□□□ 0.52
CLK3-223ENST00000568488 ATRIPQ8WXE1 791 aa18.3■□□□□ 0.52
CLK3-223ENST00000568488 SMG7Q92540 1137 aaKnown RBP18.3■□□□□ 0.52
CLK3-223ENST00000568488 SECISBP2LQ93073 1101 aaKnown RBP18.3■□□□□ 0.52
CLK3-223ENST00000568488 GCOM2Q9BZD3 368 aaPredicted RBP18.3■□□□□ 0.52
CLK3-223ENST00000568488 CHST12Q9NRB3 414 aa18.3■□□□□ 0.52
CLK3-223ENST00000568488 NRBP2Q9NSY0 501 aa18.3■□□□□ 0.52
CLK3-223ENST00000568488 USP18Q9UMW8 372 aa18.3■□□□□ 0.52
CLK3-223ENST00000568488 PCDHA10Q9Y5I2 948 aa18.3■□□□□ 0.52
CLK3-223ENST00000568488 PRR5-ARHGAP8B1AHC4 643 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 LILRB3O75022 631 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 OFD1O75665 1012 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 ALDH2P05091 517 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 SKIP12755 728 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 SREBF1P36956 1147 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 ADCY7P51828 1080 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 ARHGAP8P85298 464 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 CSTF1Q05048 431 aaKnown RBP18.29■□□□□ 0.52
CLK3-223ENST00000568488 TYW1BQ6NUM6 668 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 ZNF746Q6NUN9 644 aaPredicted RBP18.29■□□□□ 0.52
CLK3-223ENST00000568488 CYP26C1Q6V0L0 522 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 TMTC3Q6ZXV5 915 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 GET4Q7L5D6 327 aaPredicted RBP18.29■□□□□ 0.52
CLK3-223ENST00000568488 RSPH1Q8WYR4 309 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 SHDQ96IW2 340 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 FAM167AQ96KS9 214 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 FAM193BQ96PV7 902 aaPredicted RBP18.29■□□□□ 0.52
CLK3-223ENST00000568488 BCO2Q9BYV7 579 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 TBC1D22BQ9NU19 505 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 STK39Q9UEW8 545 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 DPP7Q9UHL4 492 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 FAN1Q9Y2M0 1017 aa18.29■□□□□ 0.52
CLK3-223ENST00000568488 SMCO2A6NFE2 343 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 SH2B2O14492 632 aaPredicted RBP18.28■□□□□ 0.52
CLK3-223ENST00000568488 B4GALT3O60512 393 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 ADH1AP07327 375 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 SPATA31D3P0C874 917 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 LAMP2P13473 410 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 NUCB1Q02818 461 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 LMNB2Q03252 620 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 SPATA31D4Q6ZUB0 917 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 SMAP1Q8IYB5 467 aaPredicted RBP18.28■□□□□ 0.52
CLK3-223ENST00000568488 FANCBQ8NB91 859 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 URGCPQ8TCY9 931 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 RUFY2Q8WXA3 655 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 RWDD1Q9H446 243 aaPredicted RBP18.28■□□□□ 0.52
CLK3-223ENST00000568488 PIN4Q9Y237 131 aaKnown RBP18.28■□□□□ 0.52
CLK3-223ENST00000568488 SLC12A7Q9Y666 1083 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 NUMBLQ9Y6R0 609 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 CACNA1IQ9P0X4 2223 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 FANCMQ8IYD8 2048 aa18.28■□□□□ 0.52
CLK3-223ENST00000568488 GPR179Q6PRD1 2367 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 SPTLC1O15269 473 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 DDHD2O94830 711 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 GLUD1P00367 558 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 URODP06132 367 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 STARD6P59095 220 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 SNW1Q13573 536 aaKnown RBP18.27■□□□□ 0.52
CLK3-223ENST00000568488 ZNF528Q3MIS6 628 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 JAKMIP3Q5VZ66 844 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 BORCS6Q96GS4 357 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 RPS6KC1Q96S38 1066 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 RTKNQ9BST9 563 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 SLC2A4RGQ9NR83 387 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 FAM105AQ9NUU6 356 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.27■□□□□ 0.52
CLK3-223ENST00000568488 FBXO4Q9UKT5 387 aa18.27■□□□□ 0.52
CLK3-223ENST00000568488 MYH9P35579 1960 aaKnown RBP18.26■□□□□ 0.51
CLK3-223ENST00000568488 NRP1O14786 923 aa18.26■□□□□ 0.51
CLK3-223ENST00000568488 TEX28O15482 410 aa18.26■□□□□ 0.51
CLK3-223ENST00000568488 OATP04181 439 aa18.26■□□□□ 0.51
CLK3-223ENST00000568488 SFPQP23246 707 aaKnown RBP eCLIP18.26■□□□□ 0.51
CLK3-223ENST00000568488 MCM5P33992 734 aa18.26■□□□□ 0.51
CLK3-223ENST00000568488 AP3B2Q13367 1082 aa18.26■□□□□ 0.51
CLK3-223ENST00000568488 UBXN2BQ14CS0 331 aa18.26■□□□□ 0.51
CLK3-223ENST00000568488 TAS1R1Q7RTX1 841 aa18.26■□□□□ 0.51
CLK3-223ENST00000568488 PGBD4Q96DM1 585 aa18.26■□□□□ 0.51
CLK3-223ENST00000568488 TMEM87BQ96K49 555 aa18.26■□□□□ 0.51
CLK3-223ENST00000568488 SSX2IPQ9Y2D8 614 aa18.26■□□□□ 0.51
CLK3-223ENST00000568488 IGLV3-22A0A075B6J6 115 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 A0A087WZ62 844 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 KANSL1LA0AUZ9 987 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 SOD2P04179 222 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 GPC5P78333 572 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 DRP2Q13474 957 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 HTR4Q13639 388 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 DIEXFQ68CQ4 756 aaKnown RBP18.25■□□□□ 0.51
CLK3-223ENST00000568488 PPP1R18Q6NYC8 613 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 MICU3Q86XE3 530 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 PALB2Q86YC2 1186 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 PHKBQ93100 1093 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 FDXACB1Q9BRP7 624 aaPredicted RBP18.25■□□□□ 0.51
CLK3-223ENST00000568488 MTA3Q9BTC8 594 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 RPP25Q9BUL9 199 aaKnown RBP18.25■□□□□ 0.51
CLK3-223ENST00000568488 TRAIPQ9BWF2 469 aa18.25■□□□□ 0.51
CLK3-223ENST00000568488 LRRC2Q9BYS8 371 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms