RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 MCM6Q14566 821 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 RAB30Q15771 203 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 FAM102BQ5T8I3 360 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 LRRC55Q6ZSA7 311 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 ECHDC2Q86YB7 292 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 SMG8Q8ND04 991 aaKnown RBP10.93□□□□□ -0.66
CLN3-220ENST00000566040 MCPH1Q8NEM0 835 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 TCP11Q8WWU5 503 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 RAD54LQ92698 747 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 CDX2Q99626 313 aaPredicted RBP10.93□□□□□ -0.66
CLN3-220ENST00000566040 RAD9AQ99638 391 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 JPH2Q9BR39 696 aaPredicted RBP10.93□□□□□ -0.66
CLN3-220ENST00000566040 C17orf80Q9BSJ5 609 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 FTHL17Q9BXU8 183 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 GCOM2Q9BZD3 368 aaPredicted RBP10.93□□□□□ -0.66
CLN3-220ENST00000566040 RAB34Q9BZG1 259 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 CXCL16Q9H2A7 254 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 RCOR1Q9UKL0 485 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 GPR182O15218 404 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 SPTLC2O15270 562 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 MEFVO15553 781 aaPredicted RBP10.92□□□□□ -0.66
CLN3-220ENST00000566040 TLL1O43897 1013 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 UPP2O95045 317 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 FGFR1P11362 822 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 ARF4P18085 180 aaPredicted RBP10.92□□□□□ -0.66
CLN3-220ENST00000566040 DNM2P50570 870 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 ZNF131P52739 623 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 ERVK-21P61565 698 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 MXD4Q14582 209 aaPredicted RBP10.92□□□□□ -0.66
CLN3-220ENST00000566040 EEF1DP3Q658K8 133 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 PPP4R3CPQ6ZMV5 832 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 SRGAP1Q7Z6B7 1085 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 CDR2LQ86X02 465 aaPredicted RBP10.92□□□□□ -0.66
CLN3-220ENST00000566040 NPAS4Q8IUM7 802 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 ZNF710Q8N1W2 664 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 KRI1Q8N9T8 703 aaKnown RBP10.92□□□□□ -0.66
CLN3-220ENST00000566040 LEO1Q8WVC0 666 aaPredicted RBP10.92□□□□□ -0.66
CLN3-220ENST00000566040 MYLIPQ8WY64 445 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 DNAJC19Q96DA6 116 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 CPB2Q96IY4 423 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 REEP2Q9BRK0 252 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 EIF2AQ9BY44 585 aaKnown RBP10.92□□□□□ -0.66
CLN3-220ENST00000566040 FZD8Q9H461 694 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 CERS4Q9HA82 394 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 ARHGAP28Q9P2N2 729 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 PCDHA7Q9UN72 937 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 MRPL42Q9Y6G3 142 aaKnown RBP10.92□□□□□ -0.66
CLN3-220ENST00000566040 TSC2P49815 1807 aa10.92□□□□□ -0.66
CLN3-220ENST00000566040 PLXNA3P51805 1871 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 CNTNAP2Q9UHC6 1331 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 C5orf42Q9H799 3197 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 A0A0U1RQF3 1178 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 MYMKA6NI61 221 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 SFI1A8K8P3 1242 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 ASAP2O43150 1006 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 HSP90AA1P07900 732 aaKnown RBP10.91□□□□□ -0.66
CLN3-220ENST00000566040 NAMPTP43490 491 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 PHKA2P46019 1235 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 NPTX2P47972 431 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 RAD51AP2Q09MP3 1159 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 GIT2Q14161 759 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 ZRSR1Q15695 479 aaKnown RBP10.91□□□□□ -0.66
CLN3-220ENST00000566040 FAM187BQ17R55 369 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 ZNF697Q5TEC3 545 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 NT5DC1Q5TFE4 455 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 PPP2R2DQ66LE6 453 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 AGMOQ6ZNB7 445 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 SLC24A5Q71RS6 500 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 MRPL10Q7Z7H8 261 aaKnown RBP10.91□□□□□ -0.66
CLN3-220ENST00000566040 KCNN1Q92952 543 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 CLP1Q92989 425 aaKnown RBP10.91□□□□□ -0.66
CLN3-220ENST00000566040 LPPQ93052 612 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 CASD1Q96PB1 797 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 FGFBP2Q9BYJ0 223 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 HAPLN2Q9GZV7 340 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 NT5C3AQ9H0P0 336 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 RNF39Q9H2S5 420 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 PRDM12Q9H4Q4 367 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 CWH43Q9H720 699 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 ELAC1Q9H777 363 aaKnown RBP10.91□□□□□ -0.66
CLN3-220ENST00000566040 TMEM161AQ9NX61 479 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 DAXXQ9UER7 740 aaPredicted RBP10.91□□□□□ -0.66
CLN3-220ENST00000566040 DNM3Q9UQ16 869 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 PIN4Q9Y237 131 aaKnown RBP10.91□□□□□ -0.66
CLN3-220ENST00000566040 STK24Q9Y6E0 443 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 VCANP13611 3396 aa10.91□□□□□ -0.66
CLN3-220ENST00000566040 LRRIQ4A6NIV6 560 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 CUTAO60888 179 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 ZNF623O75123 536 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 SFPQP23246 707 aaKnown RBP eCLIP10.9□□□□□ -0.66
CLN3-220ENST00000566040 UBA7P41226 1012 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 CDC42EP1Q00587 391 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 CAMK1Q14012 370 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 STK38Q15208 465 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 RESP18Q5W5W9 173 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 CATSPER4Q7RTX7 472 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 GPBP1Q86WP2 473 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 EXOC8Q8IYI6 725 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 KCTD17Q8N5Z5 321 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 TMEM161BQ8NDZ6 487 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms