RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 FAM105AQ9NUU6 356 aa19.17■□□□□ 0.66
CLN3-216ENST00000565316 COL4A3BPQ9Y5P4 624 aa19.17■□□□□ 0.66
CLN3-216ENST00000565316 WDFY4Q6ZS81 3184 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 OFD1O75665 1012 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 RFC5P40937 340 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 ZXDAP98168 799 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 ANKRD1Q15327 319 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 EARS2Q5JPH6 523 aaKnown RBP19.16■□□□□ 0.66
CLN3-216ENST00000565316 LLGL2Q6P1M3 1020 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 GLB1LQ6UWU2 654 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 TRIM67Q6ZTA4 783 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 PRPF31Q8WWY3 499 aaKnown RBP19.16■□□□□ 0.66
CLN3-216ENST00000565316 WASF1Q92558 559 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 TNFRSF25Q93038 417 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 LPPQ93052 612 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 RPGRIP1Q96KN7 1286 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 CEP170P1Q96L14 293 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 AGPAT5Q9NUQ2 364 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 TBC1D13Q9NVG8 400 aa19.16■□□□□ 0.66
CLN3-216ENST00000565316 ORC3Q9UBD5 711 aaPredicted RBP19.16■□□□□ 0.66
CLN3-216ENST00000565316 MEIS3P2A8K0S8 358 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 NT5C1B-RDH14C9J2C7 533 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 CLASP2O75122 1294 aaKnown RBP19.15■□□□□ 0.66
CLN3-216ENST00000565316 FDPSP14324 419 aaKnown RBP19.15■□□□□ 0.66
CLN3-216ENST00000565316 POLGP54098 1239 aaPredicted RBP19.15■□□□□ 0.66
CLN3-216ENST00000565316 NOMO2Q5JPE7 1267 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 SRGAP1Q7Z6B7 1085 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 MRPL10Q7Z7H8 261 aaKnown RBP19.15■□□□□ 0.66
CLN3-216ENST00000565316 TMEM173Q86WV6 379 aaPredicted RBP19.15■□□□□ 0.66
CLN3-216ENST00000565316 POTEDQ86YR6 584 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 CASP10Q92851 521 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 TMEM169Q96HH4 297 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 LXNQ9BS40 222 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 ZBP1Q9H171 429 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 NRDE2Q9H7Z3 1164 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 RGL1Q9NZL6 768 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 HCFC2Q9Y5Z7 792 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 IRAK3Q9Y616 596 aa19.15■□□□□ 0.66
CLN3-216ENST00000565316 GAS2O43903 313 aaKnown RBP19.14■□□□□ 0.65
CLN3-216ENST00000565316 DTNBO60941 627 aa19.14■□□□□ 0.65
CLN3-216ENST00000565316 ZC3H11AO75152 810 aaKnown RBP eCLIP19.14■□□□□ 0.65
CLN3-216ENST00000565316 GALTP07902 379 aa19.14■□□□□ 0.65
CLN3-216ENST00000565316 HOXA11P31270 313 aaPredicted RBP19.14■□□□□ 0.65
CLN3-216ENST00000565316 YWHABP31946 246 aaKnown RBP19.14■□□□□ 0.65
CLN3-216ENST00000565316 AK2P54819 239 aa19.14■□□□□ 0.65
CLN3-216ENST00000565316 LAMTOR4Q0VGL1 99 aa19.14■□□□□ 0.65
CLN3-216ENST00000565316 DDX53Q86TM3 631 aaKnown RBP19.14■□□□□ 0.65
CLN3-216ENST00000565316 SLFN12Q8IYM2 578 aa19.14■□□□□ 0.65
CLN3-216ENST00000565316 PSPC1Q8WXF1 523 aaKnown RBP19.14■□□□□ 0.65
CLN3-216ENST00000565316 TMEM143Q96AN5 459 aa19.14■□□□□ 0.65
CLN3-216ENST00000565316 IGSF21Q96ID5 467 aa19.14■□□□□ 0.65
CLN3-216ENST00000565316 ZSWIM4Q9H7M6 989 aa19.14■□□□□ 0.65
CLN3-216ENST00000565316 MINDY3Q9H8M7 445 aa19.14■□□□□ 0.65
CLN3-216ENST00000565316 PCDHB2Q9Y5E7 798 aa19.14■□□□□ 0.65
CLN3-216ENST00000565316 FAM205CA6NFA0 338 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 TMEM221A6NGB7 291 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 M0R296 226 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 ASAP2O43150 1006 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 CXCL14O95715 111 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 NR5A1Q13285 461 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 BMS1Q14692 1282 aaKnown RBP19.13■□□□□ 0.65
CLN3-216ENST00000565316 LONRF3Q496Y0 759 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 TPRNQ4KMQ1 711 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 AGMOQ6ZNB7 445 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 OTUD6AQ7L8S5 288 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 VPS52Q8N1B4 723 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 PGBD4Q96DM1 585 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 DYDC2Q96IM9 177 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 FBXL18Q96ME1 805 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 ADAM7Q9H2U9 754 aa19.13■□□□□ 0.65
CLN3-216ENST00000565316 MARCH6O60337 910 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 SLITRK3O94933 977 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 BAG4O95429 457 aaKnown RBP19.12■□□□□ 0.65
CLN3-216ENST00000565316 SRGAP2CP0DJJ0 459 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 CTSAP10619 480 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 KRT2P35908 639 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 ITIH3Q06033 890 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 EMC2Q15006 297 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 ME3Q16798 604 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 UBXN11Q5T124 520 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 NCAPH2Q6IBW4 605 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 FERMT3Q86UX7 667 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 BCL7CQ8WUZ0 217 aaPredicted RBP19.12■□□□□ 0.65
CLN3-216ENST00000565316 TCP11Q8WWU5 503 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 GTF3C6Q969F1 213 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 HSD17B14Q9BPX1 270 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 APOL5Q9BWW9 433 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 ZDBF2Q9HCK1 2354 aa19.12■□□□□ 0.65
CLN3-216ENST00000565316 CNTNAP2Q9UHC6 1331 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 ZBTB39O15060 712 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 B4GALT3O60512 393 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 LYPLA2O95372 231 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 SLC11A1P49279 550 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 NHLH1Q02575 133 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 RNASELQ05823 741 aaKnown RBP19.11■□□□□ 0.65
CLN3-216ENST00000565316 SIGLEC14Q08ET2 396 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 GIT2Q14161 759 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 CTTNQ14247 550 aaKnown RBP19.11■□□□□ 0.65
CLN3-216ENST00000565316 PCBP1Q15365 356 aaKnown RBP eCLIP19.11■□□□□ 0.65
CLN3-216ENST00000565316 XKR9Q5GH70 373 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms