RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 LYPLA2O95372 231 aa25.06■■□□□ 1.6
CLN3-215ENST00000565236 PBX3P40426 434 aa25.06■■□□□ 1.6
CLN3-215ENST00000565236 LONRF3Q496Y0 759 aa25.06■■□□□ 1.6
CLN3-215ENST00000565236 C8orf34Q49A92 452 aa25.06■■□□□ 1.6
CLN3-215ENST00000565236 FERMT3Q86UX7 667 aa25.06■■□□□ 1.6
CLN3-215ENST00000565236 KHSRPQ92945 711 aaKnown RBP eCLIP25.06■■□□□ 1.6
CLN3-215ENST00000565236 CCDC43Q96MW1 224 aaKnown RBP25.06■■□□□ 1.6
CLN3-215ENST00000565236 SH2B1Q9NRF2 756 aaPredicted RBP25.06■■□□□ 1.6
CLN3-215ENST00000565236 ANKEF1Q9NU02 776 aa25.06■■□□□ 1.6
CLN3-215ENST00000565236 FAM105AQ9NUU6 356 aa25.06■■□□□ 1.6
CLN3-215ENST00000565236 PER2O15055 1255 aa25.05■■□□□ 1.6
CLN3-215ENST00000565236 MBTPS2O43462 519 aa25.05■■□□□ 1.6
CLN3-215ENST00000565236 ZNF623O75123 536 aa25.05■■□□□ 1.6
CLN3-215ENST00000565236 ALDH7A1P49419 539 aaKnown RBP25.05■■□□□ 1.6
CLN3-215ENST00000565236 HMGN5P82970 282 aaKnown RBP25.05■■□□□ 1.6
CLN3-215ENST00000565236 SMAD4Q13485 552 aaKnown RBP25.05■■□□□ 1.6
CLN3-215ENST00000565236 SMAD2Q15796 467 aaKnown RBP25.05■■□□□ 1.6
CLN3-215ENST00000565236 GLB1LQ6UWU2 654 aa25.05■■□□□ 1.6
CLN3-215ENST00000565236 FAM184AQ8NB25 1140 aa25.05■■□□□ 1.6
CLN3-215ENST00000565236 RNF149Q8NC42 400 aa25.05■■□□□ 1.6
CLN3-215ENST00000565236 RSPH1Q8WYR4 309 aa25.05■■□□□ 1.6
CLN3-215ENST00000565236 LPPQ93052 612 aa25.05■■□□□ 1.6
CLN3-215ENST00000565236 KIF2CQ99661 725 aa25.05■■□□□ 1.6
CLN3-215ENST00000565236 MINDY3Q9H8M7 445 aa25.05■■□□□ 1.6
CLN3-215ENST00000565236 ENTPD7Q9NQZ7 604 aa25.05■■□□□ 1.6
CLN3-215ENST00000565236 AGPAT5Q9NUQ2 364 aa25.05■■□□□ 1.6
CLN3-215ENST00000565236 FSCN2O14926 492 aa25.04■■□□□ 1.6
CLN3-215ENST00000565236 COL9A1P20849 921 aa25.04■■□□□ 1.6
CLN3-215ENST00000565236 GNL2Q13823 731 aaKnown RBP25.04■■□□□ 1.6
CLN3-215ENST00000565236 MXD4Q14582 209 aaPredicted RBP25.04■■□□□ 1.6
CLN3-215ENST00000565236 PLPP4Q5VZY2 271 aa25.04■■□□□ 1.6
CLN3-215ENST00000565236 ADHFE1Q8IWW8 467 aa25.04■■□□□ 1.6
CLN3-215ENST00000565236 PGBD4Q96DM1 585 aa25.04■■□□□ 1.6
CLN3-215ENST00000565236 MSLNLQ96KJ4 702 aa25.04■■□□□ 1.6
CLN3-215ENST00000565236 CDCA3Q99618 268 aaPredicted RBP25.04■■□□□ 1.6
CLN3-215ENST00000565236 TCF25Q9BQ70 676 aa25.04■■□□□ 1.6
CLN3-215ENST00000565236 TMEM60Q9H2L4 133 aa25.04■■□□□ 1.6
CLN3-215ENST00000565236 FOXP1Q9H334 677 aaPredicted RBP25.04■■□□□ 1.6
CLN3-215ENST00000565236 NGRNQ9NPE2 291 aaKnown RBP25.04■■□□□ 1.6
CLN3-215ENST00000565236 CLEC1BQ9P126 229 aa25.04■■□□□ 1.6
CLN3-215ENST00000565236 FSD2A1L4K1 749 aa25.03■■□□□ 1.6
CLN3-215ENST00000565236 PI4K2BG5E9Z4 385 aa25.03■■□□□ 1.6
CLN3-215ENST00000565236 DGAT1O75907 488 aa25.03■■□□□ 1.6
CLN3-215ENST00000565236 BCAR1P56945 870 aa25.03■■□□□ 1.6
CLN3-215ENST00000565236 ZP2Q05996 745 aa25.03■■□□□ 1.6
CLN3-215ENST00000565236 FBXO18Q8NFZ0 1043 aa25.03■■□□□ 1.6
CLN3-215ENST00000565236 XPNPEP1Q9NQW7 623 aa25.03■■□□□ 1.6
CLN3-215ENST00000565236 PCDHB2Q9Y5E7 798 aa25.03■■□□□ 1.6
CLN3-215ENST00000565236 C5orf42Q9H799 3197 aa25.02■■□□□ 1.6
CLN3-215ENST00000565236 POTEMA6NI47 508 aa25.02■■□□□ 1.6
CLN3-215ENST00000565236 EYA4O95677 639 aa25.02■■□□□ 1.6
CLN3-215ENST00000565236 XRCC6P12956 609 aaKnown RBP eCLIP25.02■■□□□ 1.6
CLN3-215ENST00000565236 RBM25P49756 843 aaKnown RBP25.02■■□□□ 1.6
CLN3-215ENST00000565236 TFDP1Q14186 410 aa25.02■■□□□ 1.6
CLN3-215ENST00000565236 DUSP6Q16828 381 aa25.02■■□□□ 1.6
CLN3-215ENST00000565236 NOMO2Q5JPE7 1267 aa25.02■■□□□ 1.6
CLN3-215ENST00000565236 TMC7Q7Z402 723 aa25.02■■□□□ 1.6
CLN3-215ENST00000565236 SLC39A11Q8N1S5 342 aa25.02■■□□□ 1.6
CLN3-215ENST00000565236 PIGOQ8TEQ8 1089 aa25.02■■□□□ 1.6
CLN3-215ENST00000565236 BARX2Q9UMQ3 279 aaPredicted RBP25.02■■□□□ 1.6
CLN3-215ENST00000565236 INPP5FQ9Y2H2 1132 aa25.02■■□□□ 1.6
CLN3-215ENST00000565236 ARID2Q68CP9 1835 aa25.01■■□□□ 1.59
CLN3-215ENST00000565236 NT5C1B-RDH14C9J2C7 533 aa25.01■■□□□ 1.59
CLN3-215ENST00000565236 ERLIN2O94905 339 aa25.01■■□□□ 1.59
CLN3-215ENST00000565236 GLP2RO95838 553 aa25.01■■□□□ 1.59
CLN3-215ENST00000565236 HOXA11P31270 313 aaPredicted RBP25.01■■□□□ 1.59
CLN3-215ENST00000565236 RNASELQ05823 741 aaKnown RBP25.01■■□□□ 1.59
CLN3-215ENST00000565236 NCBP1Q09161 790 aaKnown RBP25.01■■□□□ 1.59
CLN3-215ENST00000565236 COASYQ13057 564 aa25.01■■□□□ 1.59
CLN3-215ENST00000565236 ZNF174Q15697 407 aa25.01■■□□□ 1.59
CLN3-215ENST00000565236 POP1Q99575 1024 aaKnown RBP25.01■■□□□ 1.59
CLN3-215ENST00000565236 A0A087WWV3 80 aa25■■□□□ 1.59
CLN3-215ENST00000565236 CARNS1A5YM72 827 aa25■■□□□ 1.59
CLN3-215ENST00000565236 C19orf67A6NJJ6 358 aa25■■□□□ 1.59
CLN3-215ENST00000565236 MEIS3P2A8K0S8 358 aa25■■□□□ 1.59
CLN3-215ENST00000565236 ZC3H11AO75152 810 aaKnown RBP eCLIP25■■□□□ 1.59
CLN3-215ENST00000565236 OFD1O75665 1012 aa25■■□□□ 1.59
CLN3-215ENST00000565236 RARRES1P49788 294 aa25■■□□□ 1.59
CLN3-215ENST00000565236 PTENP60484 403 aa25■■□□□ 1.59
CLN3-215ENST00000565236 ORC2Q13416 577 aaPredicted RBP25■■□□□ 1.59
CLN3-215ENST00000565236 PCBP1Q15365 356 aaKnown RBP eCLIP25■■□□□ 1.59
CLN3-215ENST00000565236 TMEM31Q5JXX7 168 aa25■■□□□ 1.59
CLN3-215ENST00000565236 MRPL10Q7Z7H8 261 aaKnown RBP25■■□□□ 1.59
CLN3-215ENST00000565236 SMRP1Q8NCR6 262 aa25■■□□□ 1.59
CLN3-215ENST00000565236 TMEM169Q96HH4 297 aa25■■□□□ 1.59
CLN3-215ENST00000565236 TBC1D13Q9NVG8 400 aa25■■□□□ 1.59
CLN3-215ENST00000565236 HIDE1A8MVS5 230 aa24.99■■□□□ 1.59
CLN3-215ENST00000565236 SPATA31C1P0DKV0 1188 aa24.99■■□□□ 1.59
CLN3-215ENST00000565236 SRGAP2BP0DMP2 458 aa24.99■■□□□ 1.59
CLN3-215ENST00000565236 ALADP13716 330 aa24.99■■□□□ 1.59
CLN3-215ENST00000565236 ARL2P36404 184 aa24.99■■□□□ 1.59
CLN3-215ENST00000565236 TECP42680 631 aa24.99■■□□□ 1.59
CLN3-215ENST00000565236 POU5F1BQ06416 359 aa24.99■■□□□ 1.59
CLN3-215ENST00000565236 BMS1Q14692 1282 aaKnown RBP24.99■■□□□ 1.59
CLN3-215ENST00000565236 CATSPER3Q86XQ3 398 aa24.99■■□□□ 1.59
CLN3-215ENST00000565236 NOSTRINQ8IVI9 506 aa24.99■■□□□ 1.59
CLN3-215ENST00000565236 URGCPQ8TCY9 931 aa24.99■■□□□ 1.59
CLN3-215ENST00000565236 TUFT1Q9NNX1 390 aa24.99■■□□□ 1.59
CLN3-215ENST00000565236 INO80B-WBP1J3KQ70 363 aa24.98■■□□□ 1.59
CLN3-215ENST00000565236 OR52Z1P0C646 297 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms