RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 RARRES1P49788 294 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 NDUFV1P49821 464 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 ZP2Q05996 745 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 SRGAP1Q7Z6B7 1085 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 EXOC8Q8IYI6 725 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 SLC39A11Q8N1S5 342 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 RNF149Q8NC42 400 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 VN1R2Q8NFZ6 395 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 MICAL1Q8TDZ2 1067 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 PPP2R3CQ969Q6 453 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 ZSCAN31Q96LW9 406 aaPredicted RBP12.08□□□□□ -0.48
VPS39-208ENST00000564994 ZNF558Q96NG5 402 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 MTRQ99707 1265 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 RAPGEFL1Q9UHV5 662 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 LZTS1Q9Y250 596 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 C19orf67A6NJJ6 358 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 HIDE1A8MVS5 230 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 NT5C1B-RDH14C9J2C7 533 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 ASAP2O43150 1006 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 GAS2O43903 313 aaKnown RBP12.07□□□□□ -0.48
VPS39-208ENST00000564994 ZNF623O75123 536 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 SPATA31C1P0DKV0 1188 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 RBM25P49756 843 aaKnown RBP12.07□□□□□ -0.48
VPS39-208ENST00000564994 SMAD4Q13485 552 aaKnown RBP12.07□□□□□ -0.48
VPS39-208ENST00000564994 SAFBQ15424 915 aaKnown RBP eCLIP12.07□□□□□ -0.48
VPS39-208ENST00000564994 ZNF174Q15697 407 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 SMAD2Q15796 467 aaKnown RBP12.07□□□□□ -0.48
VPS39-208ENST00000564994 DUSP6Q16828 381 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 UBXN11Q5T124 520 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 PLPP4Q5VZY2 271 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 FBXO18Q8NFZ0 1043 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 ASAP3Q8TDY4 903 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 PIGOQ8TEQ8 1089 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 TCP11Q8WWU5 503 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 TCF25Q9BQ70 676 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 TLE6Q9H808 572 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 C11orf16Q9NQ32 467 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 ANKEF1Q9NU02 776 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 SPG21Q9NZD8 308 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 CD207Q9UJ71 328 aa12.07□□□□□ -0.48
VPS39-208ENST00000564994 BARX2Q9UMQ3 279 aaPredicted RBP12.07□□□□□ -0.48
VPS39-208ENST00000564994 TDRD15B5MCY1 1934 aaKnown RBP12.06□□□□□ -0.48
VPS39-208ENST00000564994 PI4K2BG5E9Z4 385 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 B4GALT3O60512 393 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 MED24O75448 989 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 OFD1O75665 1012 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 EYA4O95677 639 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 SKIP12755 728 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 COL9A1P20849 921 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 SSTR3P32745 418 aaPredicted RBP12.06□□□□□ -0.48
VPS39-208ENST00000564994 PPM1AP35813 382 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 ARL2P36404 184 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 AFF1P51825 1210 aaKnown RBP12.06□□□□□ -0.48
VPS39-208ENST00000564994 BCAR1P56945 870 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 COASYQ13057 564 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 CAPSQ13938 189 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 KCNC3Q14003 757 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 PDE12Q6L8Q7 609 aaKnown RBP12.06□□□□□ -0.48
VPS39-208ENST00000564994 AGMOQ6ZNB7 445 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 MRPL10Q7Z7H8 261 aaKnown RBP12.06□□□□□ -0.48
VPS39-208ENST00000564994 TMEM173Q86WV6 379 aaPredicted RBP12.06□□□□□ -0.48
VPS39-208ENST00000564994 CATSPER3Q86XQ3 398 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 ADHFE1Q8IWW8 467 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 C1QTNF1Q9BXJ1 281 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 MRPL9Q9BYD2 267 aaKnown RBP12.06□□□□□ -0.48
VPS39-208ENST00000564994 FOXP1Q9H334 677 aaPredicted RBP12.06□□□□□ -0.48
VPS39-208ENST00000564994 NRDE2Q9H7Z3 1164 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 SH2B1Q9NRF2 756 aaPredicted RBP12.06□□□□□ -0.48
VPS39-208ENST00000564994 TBC1D13Q9NVG8 400 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 PRKAG3Q9UGI9 489 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 PUF60Q9UHX1 559 aaKnown RBP12.06□□□□□ -0.48
VPS39-208ENST00000564994 FAM50BQ9Y247 325 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 INPP5FQ9Y2H2 1132 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 PCDHB2Q9Y5E7 798 aa12.06□□□□□ -0.48
VPS39-208ENST00000564994 TSPAN1O60635 241 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 DGAT1O75907 488 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 GLRA2P23416 452 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 TECP42680 631 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 RAB27AP51159 221 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 PTENP60484 403 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 HMGN5P82970 282 aaKnown RBP12.05□□□□□ -0.48
VPS39-208ENST00000564994 KRT17Q04695 432 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 MXD4Q14582 209 aaPredicted RBP12.05□□□□□ -0.48
VPS39-208ENST00000564994 NBR1Q14596 966 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 AMHR2Q16671 573 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 NOMO2Q5JPE7 1267 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 TTC38Q5R3I4 469 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 GLB1LQ6UWU2 654 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 IFNLR1Q8IU57 520 aaPredicted RBP12.05□□□□□ -0.48
VPS39-208ENST00000564994 FAM184AQ8NB25 1140 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 SMRP1Q8NCR6 262 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 BCL7CQ8WUZ0 217 aaPredicted RBP12.05□□□□□ -0.48
VPS39-208ENST00000564994 CDCA3Q99618 268 aaPredicted RBP12.05□□□□□ -0.48
VPS39-208ENST00000564994 LRFN3Q9BTN0 628 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 ENTPD7Q9NQZ7 604 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 DNAJB4Q9UDY4 337 aa12.05□□□□□ -0.48
VPS39-208ENST00000564994 FAM86C2PA6NEL3 165 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 USO1O60763 962 aaKnown RBP12.04□□□□□ -0.48
VPS39-208ENST00000564994 ZC3H11AO75152 810 aaKnown RBP eCLIP12.04□□□□□ -0.48
VPS39-208ENST00000564994 GALTP07902 379 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms