RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 STX17P56962 302 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 SNRPFP62306 86 aaKnown RBP14.09□□□□□ -0.15
CLK3-214ENST00000564096 POU5F1BQ06416 359 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 SPAG1Q07617 926 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 HSP90AA2PQ14568 343 aaPredicted RBP14.09□□□□□ -0.15
CLK3-214ENST00000564096 UVSSAQ2YD98 709 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 EDRF1Q3B7T1 1238 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 MARCH8Q5T0T0 291 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 CENPPQ6IPU0 288 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 FAM114A1Q8IWE2 563 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 DHX40Q8IX18 779 aaKnown RBP14.09□□□□□ -0.15
CLK3-214ENST00000564096 ZNF507Q8TCN5 953 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 NLRP7Q8WX94 980 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 ANP32BQ92688 251 aaKnown RBP14.09□□□□□ -0.15
CLK3-214ENST00000564096 BICD1Q96G01 975 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 KIFC3Q9BVG8 833 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 FAM49AQ9H0Q0 323 aaPredicted RBP14.09□□□□□ -0.15
CLK3-214ENST00000564096 GBP3Q9H0R5 595 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 GRPEL1Q9HAV7 217 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 NFE2L3Q9Y4A8 694 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 SCN10AQ9Y5Y9 1956 aa14.09□□□□□ -0.15
CLK3-214ENST00000564096 PDXKO00764 312 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 HNRNPDLO14979 420 aaKnown RBP14.08□□□□□ -0.16
CLK3-214ENST00000564096 GJB1P08034 283 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 RPL13P26373 211 aaKnown RBP14.08□□□□□ -0.16
CLK3-214ENST00000564096 ADAM17P78536 824 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 MKRN4PQ13434 485 aaPredicted RBP14.08□□□□□ -0.16
CLK3-214ENST00000564096 DRP2Q13474 957 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 IQCB1Q15051 598 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 MAPK6Q16659 721 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 ZC2HC1CQ53FD0 456 aaPredicted RBP14.08□□□□□ -0.16
CLK3-214ENST00000564096 NME8Q8N427 588 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 CSGALNACT2Q8N6G5 542 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 GLIS3Q8NEA6 775 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 U2AF1L4Q8WU68 220 aaKnown RBP14.08□□□□□ -0.16
CLK3-214ENST00000564096 STRA6Q9BX79 667 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 TMEM134Q9H6X4 195 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 MAGEC2Q9UBF1 373 aaPredicted RBP14.08□□□□□ -0.16
CLK3-214ENST00000564096 TBX20Q9UMR3 447 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 MROH7Q68CQ1 1323 aa14.08□□□□□ -0.16
CLK3-214ENST00000564096 TRIM49BA6NDI0 452 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 TREHO43280 583 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 CAND2O75155 1236 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 SRGAP2CP0DJJ0 459 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 LIG4P49917 911 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 FKBP3Q00688 224 aaKnown RBP14.07□□□□□ -0.16
CLK3-214ENST00000564096 PCBP1Q15365 356 aaKnown RBP eCLIP14.07□□□□□ -0.16
CLK3-214ENST00000564096 ZCWPW2Q504Y3 356 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 TTI2Q6NXR4 508 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 KIAA0319LQ8IZA0 1049 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 ANKLE1Q8NAG6 615 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 CEP63Q96MT8 703 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 TMEM106CQ9BVX2 250 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 INO80BQ9C086 356 aaPredicted RBP14.07□□□□□ -0.16
CLK3-214ENST00000564096 CRISPLD2Q9H0B8 497 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 KCTD10Q9H3F6 313 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 THAP9Q9H5L6 903 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 PRMT7Q9NVM4 692 aaPredicted RBP14.07□□□□□ -0.16
CLK3-214ENST00000564096 TRAF3IP3Q9Y228 551 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 ADGRA3Q8IWK6 1321 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 ZMYM2Q9UBW7 1377 aa14.07□□□□□ -0.16
CLK3-214ENST00000564096 INO80B-WBP1J3KQ70 363 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 K7ERI5 159 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 CETN3O15182 167 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 SGPL1O95470 568 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 TFRCP02786 760 aaKnown RBP14.06□□□□□ -0.16
CLK3-214ENST00000564096 VTNP04004 478 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 PRKCBP05771 671 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 TPM2P07951 284 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 NR2F2P24468 414 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 GPC3P51654 580 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 PTENP60484 403 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 PTGISQ16647 500 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 NFIL3Q16649 462 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 TMEM132AQ24JP5 1023 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 GDF6Q6KF10 455 aaPredicted RBP14.06□□□□□ -0.16
CLK3-214ENST00000564096 RUFY4Q6ZNE9 571 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 SRGAP1Q7Z6B7 1085 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 SERINC5Q86VE9 423 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 IFNLR1Q8IU57 520 aaPredicted RBP14.06□□□□□ -0.16
CLK3-214ENST00000564096 CCDC155Q8N6L0 562 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 ZBTB10Q96DT7 871 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 PRIMPOLQ96LW4 560 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 MRPL4Q9BYD3 311 aaKnown RBP14.06□□□□□ -0.16
CLK3-214ENST00000564096 GCOM2Q9BZD3 368 aaPredicted RBP14.06□□□□□ -0.16
CLK3-214ENST00000564096 SEMA6BQ9H3T3 888 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 AGPAT3Q9NRZ7 376 aa14.06□□□□□ -0.16
CLK3-214ENST00000564096 ARVCFO00192 962 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 KIAA0391O15091 583 aaKnown RBP14.05□□□□□ -0.16
CLK3-214ENST00000564096 SLC16A3O15427 465 aaKnown RBP14.05□□□□□ -0.16
CLK3-214ENST00000564096 ERLIN2O94905 339 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 GNA14O95837 355 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 NR3C1P04150 777 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 TPM3P06753 285 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 CDK11BP21127 795 aaKnown RBP14.05□□□□□ -0.16
CLK3-214ENST00000564096 SFPQP23246 707 aaKnown RBP eCLIP14.05□□□□□ -0.16
CLK3-214ENST00000564096 EEF1GP26641 437 aaKnown RBP14.05□□□□□ -0.16
CLK3-214ENST00000564096 GJA8P48165 433 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 PMS1P54277 932 aaKnown RBP14.05□□□□□ -0.16
CLK3-214ENST00000564096 NLRP11P59045 1033 aaKnown RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms