RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 LIMA1Q9UHB6 759 aaKnown RBP11.16□□□□□ -0.62
SMG1-208ENST00000563448 TRIP11Q15643 1979 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 C17orf102A2RUQ5 167 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 TISP43B9A030 160 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 TREHO43280 583 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 FGFR1OPO95684 399 aaKnown RBP11.16□□□□□ -0.62
SMG1-208ENST00000563448 SERPINC1P01008 464 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 NR3C1P04150 777 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 NR2F2P24468 414 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 TMOD1P28289 359 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 SPAG1Q07617 926 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 ADAM9Q13443 819 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 NFIL3Q16649 462 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 RUFY4Q6ZNE9 571 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 FILIP1Q7Z7B0 1213 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 KIAA0319LQ8IZA0 1049 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 C7orf31Q8N865 590 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 RNF149Q8NC42 400 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 ZNF668Q96K58 619 aaPredicted RBP11.16□□□□□ -0.62
SMG1-208ENST00000563448 CNOT6LQ96LI5 555 aaKnown RBP11.16□□□□□ -0.62
SMG1-208ENST00000563448 CEP63Q96MT8 703 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 XPO4Q9C0E2 1151 aaKnown RBP11.16□□□□□ -0.62
SMG1-208ENST00000563448 TMEM134Q9H6X4 195 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 AGPAT3Q9NRZ7 376 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 EXOC7Q9UPT5 735 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 AKT3Q9Y243 479 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 CENPFP49454 3210 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 HTTP42858 3142 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 GRIN2DO15399 1336 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 SMIM35A0A1B0GVV1 85 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 LRRC10BA6NIK2 292 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 ANKRD63C9JTQ0 380 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 K7ERI5 159 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 VTNP04004 478 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 EDN1P05305 212 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 CYP2C9P11712 490 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 EEF1GP26641 437 aaKnown RBP11.15□□□□□ -0.62
SMG1-208ENST00000563448 ABCD1P33897 745 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 UBASH3AP57075 661 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 TFDP1Q14186 410 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 KRT31Q15323 416 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 MTFR1Q15390 333 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 SLC9C1Q4G0N8 1177 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 SLC39A4Q6P5W5 647 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 HS2ST1Q7LGA3 356 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 CREBRFQ8IUR6 639 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 FAM114A1Q8IWE2 563 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 ANP32BQ92688 251 aaKnown RBP11.15□□□□□ -0.62
SMG1-208ENST00000563448 PDLIM2Q96JY6 352 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 NLRP4Q96MN2 994 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 CCDC113Q9H0I3 377 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 GTF2IRD1Q9UHL9 959 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 PHLPP2Q6ZVD8 1323 aa11.15□□□□□ -0.62
SMG1-208ENST00000563448 A0A087WZ62 844 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 CETN3O15182 167 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 SCP2P22307 547 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 ACLYP53396 1101 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 COPB1P53618 953 aaKnown RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 POU5F1BQ06416 359 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 CTU1Q7Z7A3 348 aaKnown RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 MRFAP1L1Q96HT8 127 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 PPP1R16BQ96T49 567 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 FDXACB1Q9BRP7 624 aaPredicted RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 TSEN34Q9BSV6 310 aaKnown RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 C2orf40Q9H1Z8 148 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 IFT122Q9HBG6 1241 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 PAK6Q9NQU5 681 aaPredicted RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 INTS13Q9NVM9 706 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 DMAC2Q9NW81 257 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 TAB2Q9NYJ8 693 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 MAGEC2Q9UBF1 373 aaPredicted RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 USP20Q9Y2K6 914 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 CITO14578 2027 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 A0A1B0GTH6 734 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 MYCP01106 439 aaPredicted RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 HSPA1AP0DMV8 641 aaKnown RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 HSPA1BP0DMV9 641 aaKnown RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 CCL5P13501 91 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 RPL13P26373 211 aaKnown RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 CASP4P49662 377 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 GPC3P51654 580 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 LBX1P52954 281 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 PTENP60484 403 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 SNRPFP62306 86 aaKnown RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 STRN3Q13033 797 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 NR1I3Q14994 352 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 GDF6Q6KF10 455 aaPredicted RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 SESTD1Q86VW0 696 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 IFNLR1Q8IU57 520 aaPredicted RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 SLC9A9Q8IVB4 645 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 ZBTB8OSQ8IWT0 167 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 C12orf56Q8IXR9 622 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 GOLGA5Q8TBA6 731 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 TMEM174Q8WUU8 243 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 PPP1R9BQ96SB3 815 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 MAP7D2Q96T17 732 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 NFKBIZQ9BYH8 718 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 FAM49AQ9H0Q0 323 aaPredicted RBP11.14□□□□□ -0.63
SMG1-208ENST00000563448 PCIF1Q9H4Z3 704 aa11.14□□□□□ -0.63
SMG1-208ENST00000563448 MINDY3Q9H8M7 445 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms