RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ZMYM2Q9UBW7 1377 aa18.28■□□□□ 0.52
VPS4A-202ENST00000562754 DENND3A2RUS2 1198 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 DCDC2CA8MYV0 355 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 EIF3DO15371 548 aaKnown RBP eCLIP18.27■□□□□ 0.52
VPS4A-202ENST00000562754 CAND2O75155 1236 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 PRPF6O94906 941 aaKnown RBP18.27■□□□□ 0.52
VPS4A-202ENST00000562754 CHRNA1P02708 482 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 EDN1P05305 212 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 RPLP2P05387 115 aaKnown RBP18.27■□□□□ 0.52
VPS4A-202ENST00000562754 HOXD13P35453 343 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 PHKA2P46019 1235 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 GTF2BQ00403 316 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 MBTD1Q05BQ5 628 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 STX1AQ16623 288 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 TNS4Q8IZW8 715 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 SLC17A8Q8NDX2 589 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 TMEM40Q8WWA1 233 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 SCLT1Q96NL6 688 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 NFKBIZQ9BYH8 718 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 CELF4Q9BZC1 486 aaKnown RBP18.27■□□□□ 0.52
VPS4A-202ENST00000562754 MAPK8IP1Q9UQF2 711 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 GINS2Q9Y248 185 aa18.27■□□□□ 0.52
VPS4A-202ENST00000562754 UBE4BO95155 1302 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 PHLPP2Q6ZVD8 1323 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 PPP1R3GB7ZBB8 358 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 CKBP12277 381 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 DARSP14868 501 aaKnown RBP18.26■□□□□ 0.51
VPS4A-202ENST00000562754 PRCPP42785 496 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 CDC42EP1Q00587 391 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 KCNA1Q09470 495 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 ALCAMQ13740 583 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 BMT2Q1RMZ1 405 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 COBLL1Q53SF7 1204 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 FAM26DQ5JW98 314 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 L1TD1Q5T7N2 865 aaKnown RBP18.26■□□□□ 0.51
VPS4A-202ENST00000562754 ZNF618Q5T7W0 954 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 C11orf57Q6ZUT1 292 aaPredicted RBP18.26■□□□□ 0.51
VPS4A-202ENST00000562754 ZBTB8OSQ8IWT0 167 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 MYOCDQ8IZQ8 938 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 ADSSL1Q8N142 457 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 CAGE1Q8TC20 777 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 NOC4LQ9BVI4 516 aaKnown RBP18.26■□□□□ 0.51
VPS4A-202ENST00000562754 GTPBP4Q9BZE4 634 aaKnown RBP18.26■□□□□ 0.51
VPS4A-202ENST00000562754 OSBPL7Q9BZF2 842 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 C2orf40Q9H1Z8 148 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 IKZF4Q9H2S9 585 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 KCNG1Q9UIX4 513 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 TBX21Q9UL17 535 aa18.26■□□□□ 0.51
VPS4A-202ENST00000562754 UMODL1Q5DID0 1318 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 CCDC85CA6NKD9 419 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 H0YCG3 227 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 CSDE1O75534 798 aaKnown RBP18.25■□□□□ 0.51
VPS4A-202ENST00000562754 IQCF3P0C7M6 154 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 CCDC192P0DO97 292 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 CRYBB1P53674 252 aaPredicted RBP18.25■□□□□ 0.51
VPS4A-202ENST00000562754 ZNF445P59923 1031 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 SRGAP1Q7Z6B7 1085 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 MAP4K3Q8IVH8 894 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 NELFCDQ8IXH7 590 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 ZNF710Q8N1W2 664 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 GUF1Q8N442 669 aaKnown RBP18.25■□□□□ 0.51
VPS4A-202ENST00000562754 ZNF507Q8TCN5 953 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 HVCN1Q96D96 273 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 GCOM2Q9BZD3 368 aaPredicted RBP18.25■□□□□ 0.51
VPS4A-202ENST00000562754 TMEM134Q9H6X4 195 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 ANO10Q9NW15 660 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 TBX20Q9UMR3 447 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 PCDHB13Q9Y5F0 798 aa18.25■□□□□ 0.51
VPS4A-202ENST00000562754 INO80B-WBP1J3KQ70 363 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 M0QZ92 97 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 PRKCBP05771 671 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 CLTBP09497 229 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 FGFR4P22455 802 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 EFNA5P52803 228 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 MBTPS1Q14703 1052 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 AMHR2Q16671 573 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 STXBP4Q6ZWJ1 553 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 CCDC155Q8N6L0 562 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 MLKLQ8NB16 471 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 INO80BQ9C086 356 aaPredicted RBP18.24■□□□□ 0.51
VPS4A-202ENST00000562754 DNAJC25Q9H1X3 360 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 FZD8Q9H461 694 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 USP20Q9Y2K6 914 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 DNAH12Q6ZR08 3092 aa18.24■□□□□ 0.51
VPS4A-202ENST00000562754 SCN5AQ14524 2016 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 TTLL13PA6NNM8 815 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 K7ERI5 159 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 PITPNM1O00562 1244 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 SELPP16109 830 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 SCP2P22307 547 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 BFSP2Q13515 415 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 ANO6Q4KMQ2 910 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 FBXO47Q5MNV8 452 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 KLHL10Q6JEL2 608 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 LRSAM1Q6UWE0 723 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 PPP4R3CPQ6ZMV5 832 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 LRRC8DQ7L1W4 858 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 ACCSQ96QU6 501 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 MED15Q96RN5 788 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 KCTD10Q9H3F6 313 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms