RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 TSHZ2Q9NRE2 1034 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 PIN4Q9Y237 131 aaKnown RBP11.49□□□□□ -0.57
CLK3-205ENST00000561673 NCOR1O75376 2440 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 A0A087WWV3 80 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 FSCN2O14926 492 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 PER2O15055 1255 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 ASAP2O43150 1006 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 GAS2O43903 313 aaKnown RBP11.48□□□□□ -0.57
CLK3-205ENST00000561673 LYPLA2O95372 231 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 HOXA11P31270 313 aaPredicted RBP11.48□□□□□ -0.57
CLK3-205ENST00000561673 MCM7P33993 719 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 NDUFV1P49821 464 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 FERMT3Q86UX7 667 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 RNF149Q8NC42 400 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 TCP11Q8WWU5 503 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 MRPS27Q92552 414 aaKnown RBP11.48□□□□□ -0.57
CLK3-205ENST00000561673 LPPQ93052 612 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 MSLNLQ96KJ4 702 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 ZNF558Q96NG5 402 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 MTRQ99707 1265 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 FOXP1Q9H334 677 aaPredicted RBP11.48□□□□□ -0.57
CLK3-205ENST00000561673 TLE6Q9H808 572 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 FAM105AQ9NUU6 356 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 CLEC1BQ9P126 229 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 PUF60Q9UHX1 559 aaKnown RBP11.48□□□□□ -0.57
CLK3-205ENST00000561673 FAM50BQ9Y247 325 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 LZTS1Q9Y250 596 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 FNDC1Q4ZHG4 1894 aaPredicted RBP11.48□□□□□ -0.57
CLK3-205ENST00000561673 TRIOO75962 3097 aa11.48□□□□□ -0.57
CLK3-205ENST00000561673 KIAA1671Q9BY89 1806 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 POTEMA6NI47 508 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 MEIS3P2A8K0S8 358 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 MBTPS2O43462 519 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 ZNF623O75123 536 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 GLP2RO95838 553 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 SPATA31C1P0DKV0 1188 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 SKIP12755 728 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 SSTR3P32745 418 aaPredicted RBP11.47□□□□□ -0.57
CLK3-205ENST00000561673 KRT17Q04695 432 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 ZNF174Q15697 407 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 SMAD2Q15796 467 aaKnown RBP11.47□□□□□ -0.57
CLK3-205ENST00000561673 PDE12Q6L8Q7 609 aaKnown RBP11.47□□□□□ -0.57
CLK3-205ENST00000561673 SRGAP1Q7Z6B7 1085 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 FBXO18Q8NFZ0 1043 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 PIGOQ8TEQ8 1089 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 C1QTNF1Q9BXJ1 281 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 XPNPEP1Q9NQW7 623 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 SH2B1Q9NRF2 756 aaPredicted RBP11.47□□□□□ -0.57
CLK3-205ENST00000561673 ANKEF1Q9NU02 776 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 AGPAT5Q9NUQ2 364 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 SPG21Q9NZD8 308 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 CD207Q9UJ71 328 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 PCDHB2Q9Y5E7 798 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 ATG2AQ2TAZ0 1938 aa11.47□□□□□ -0.57
CLK3-205ENST00000561673 HIDE1A8MVS5 230 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 NT5C1B-RDH14C9J2C7 533 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 PI4K2BG5E9Z4 385 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 OFD1O75665 1012 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 DGAT1O75907 488 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 EYA4O95677 639 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 XRCC6P12956 609 aaKnown RBP eCLIP11.46□□□□□ -0.57
CLK3-205ENST00000561673 COL9A1P20849 921 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 PPM1AP35813 382 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 ARL2P36404 184 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 TECP42680 631 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 ALDH7A1P49419 539 aaKnown RBP11.46□□□□□ -0.57
CLK3-205ENST00000561673 RBM25P49756 843 aaKnown RBP11.46□□□□□ -0.57
CLK3-205ENST00000561673 RARRES1P49788 294 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 BCAR1P56945 870 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 HMGN5P82970 282 aaKnown RBP11.46□□□□□ -0.57
CLK3-205ENST00000561673 RBM10P98175 930 aaKnown RBP11.46□□□□□ -0.57
CLK3-205ENST00000561673 ZP2Q05996 745 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 SMAD4Q13485 552 aaKnown RBP11.46□□□□□ -0.57
CLK3-205ENST00000561673 MXD4Q14582 209 aaPredicted RBP11.46□□□□□ -0.57
CLK3-205ENST00000561673 DUSP6Q16828 381 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 PLPP4Q5VZY2 271 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 CATSPER3Q86XQ3 398 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 ADHFE1Q8IWW8 467 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 SLC39A11Q8N1S5 342 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 FAM184AQ8NB25 1140 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 VN1R2Q8NFZ6 395 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 TCF25Q9BQ70 676 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 MRPL9Q9BYD2 267 aaKnown RBP11.46□□□□□ -0.57
CLK3-205ENST00000561673 PRKAG3Q9UGI9 489 aa11.46□□□□□ -0.57
CLK3-205ENST00000561673 BARX2Q9UMQ3 279 aaPredicted RBP11.46□□□□□ -0.57
CLK3-205ENST00000561673 C19orf67A6NJJ6 358 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 MED24O75448 989 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 RAB27AP51159 221 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 AFF1P51825 1210 aaKnown RBP11.45□□□□□ -0.58
CLK3-205ENST00000561673 PTENP60484 403 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 COASYQ13057 564 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 NOMO2Q5JPE7 1267 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 UBXN11Q5T124 520 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 GLB1LQ6UWU2 654 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 AGMOQ6ZNB7 445 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 TMC7Q7Z402 723 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 MRPL10Q7Z7H8 261 aaKnown RBP11.45□□□□□ -0.58
CLK3-205ENST00000561673 NOSTRINQ8IVI9 506 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 SMRP1Q8NCR6 262 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 ASAP3Q8TDY4 903 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms