RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 FBXL18Q96ME1 805 aa14.09□□□□□ -0.15
SNX1-211ENST00000560829 SMARCAD1Q9H4L7 1026 aa14.09□□□□□ -0.15
SNX1-211ENST00000560829 PCIF1Q9H4Z3 704 aa14.09□□□□□ -0.15
SNX1-211ENST00000560829 SIX2Q9NPC8 291 aa14.09□□□□□ -0.15
SNX1-211ENST00000560829 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.09□□□□□ -0.15
SNX1-211ENST00000560829 AIPL1Q9NZN9 384 aa14.09□□□□□ -0.15
SNX1-211ENST00000560829 DAAM1Q9Y4D1 1078 aa14.09□□□□□ -0.15
SNX1-211ENST00000560829 IGKV6-21A0A0C4DH24 114 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 SLC15A5A6NIM6 579 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 IGF2BP3O00425 579 aaKnown RBP eCLIP14.08□□□□□ -0.16
SNX1-211ENST00000560829 RIOK3O14730 519 aaKnown RBP14.08□□□□□ -0.16
SNX1-211ENST00000560829 PMM2O15305 246 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 P4HA2O15460 535 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 LCA5LO95447 670 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 SNAI1O95863 264 aaPredicted RBP14.08□□□□□ -0.16
SNX1-211ENST00000560829 PIGRP01833 764 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 KRT13P13646 458 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 UCHL3P15374 230 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 GARTP22102 1010 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 ARHGAP25P42331 645 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 PLCB4Q15147 1175 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 HGSNATQ68CP4 663 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 SLC39A4Q6P5W5 647 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 MSL3Q8N5Y2 521 aaKnown RBP14.08□□□□□ -0.16
SNX1-211ENST00000560829 TMEM143Q96AN5 459 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 MAML3Q96JK9 1138 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 CCDC42Q96M95 316 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 NLRC4Q9NPP4 1024 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 DNAI1Q9UI46 699 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 DOCK5Q9H7D0 1870 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 ZBTB42B2RXF5 422 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 FANCGO15287 622 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 TLR2O60603 784 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 N4BP1O75113 896 aaKnown RBP14.08□□□□□ -0.16
SNX1-211ENST00000560829 GH1P01241 217 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 VAMP7P51809 220 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 APBA1Q02410 837 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 IRF5Q13568 498 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 ASTE1Q2TB18 679 aaPredicted RBP14.08□□□□□ -0.16
SNX1-211ENST00000560829 TMEM63BQ5T3F8 832 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 SFMBT2Q5VUG0 894 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 RGMBQ6NW40 437 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 DPP9Q86TI2 863 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 L2HGDHQ9H9P8 463 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 GCNT4Q9P109 453 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 MYO1AQ9UBC5 1043 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 STYXL1Q9Y6J8 313 aa14.08□□□□□ -0.16
SNX1-211ENST00000560829 PASKQ96RG2 1323 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 A0A0U1RQJ8 604 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 IPO7O95373 1038 aaKnown RBP14.07□□□□□ -0.16
SNX1-211ENST00000560829 SERPING1P05155 500 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 TRIM49P0CI25 452 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 TRIM49CP0CI26 452 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 ACTN1P12814 892 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 INHBEP58166 350 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 GNG11P61952 73 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 SLC9C1Q4G0N8 1177 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 CBWD6Q4V339 395 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 ARHGAP29Q52LW3 1261 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 CBWD3Q5JTY5 395 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 CBWD5Q5RIA9 395 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 C1orf220Q5T0J3 134 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 IER5Q5VY09 327 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 TRIM50Q86XT4 487 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 RDH13Q8NBN7 331 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 PPTC7Q8NI37 304 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 ATRIPQ8WXE1 791 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 JPH2Q9BR39 696 aaPredicted RBP14.07□□□□□ -0.16
SNX1-211ENST00000560829 HAUS4Q9H6D7 363 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 TMEM134Q9H6X4 195 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 LZTFL1Q9NQ48 299 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 ZNF236Q9UL36 1845 aa14.07□□□□□ -0.16
SNX1-211ENST00000560829 UQCRHLA0A096LP55 91 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 HNRNPDLO14979 420 aaKnown RBP14.06□□□□□ -0.16
SNX1-211ENST00000560829 KIAA0391O15091 583 aaKnown RBP14.06□□□□□ -0.16
SNX1-211ENST00000560829 KIF5CO60282 957 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 HBP1O60381 514 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 UQCRHP07919 91 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 PLEKP08567 350 aaPredicted RBP14.06□□□□□ -0.16
SNX1-211ENST00000560829 SLC10A3P09131 477 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 MYL7Q01449 175 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 SNRNP35Q16560 246 aaKnown RBP14.06□□□□□ -0.16
SNX1-211ENST00000560829 MORN1Q5T089 497 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 DEPTORQ8TB45 409 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 TCP11Q8WWU5 503 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 TINF2Q9BSI4 451 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 SLC5A4Q9NY91 659 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 FHOD1Q9Y613 1164 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 WDR81Q562E7 1941 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 DCAF8L1A6NGE4 600 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 RBAK-RBAKDNI3L0D1 243 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 ZNF263O14978 683 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 ADCY3O60266 1144 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 MARK3P27448 753 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 EIF4A3P38919 411 aaKnown RBP14.06□□□□□ -0.16
SNX1-211ENST00000560829 KIF11P52732 1056 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 JAM2P57087 298 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 DLG4P78352 724 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 STRN3Q13033 797 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 CAPSQ13938 189 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms