RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 MAP4K3Q8IVH8 894 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 LINC01465Q8N7H1 131 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 DNAJC5GQ8N7S2 189 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 DEPTORQ8TB45 409 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 GOLGA5Q8TBA6 731 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 KCNN1Q92952 543 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 CNOT6LQ96LI5 555 aaKnown RBP12.32□□□□□ -0.44
USP3-218ENST00000560202 SETD4Q9NVD3 440 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 DDX20Q9UHI6 824 aaKnown RBP12.32□□□□□ -0.44
USP3-218ENST00000560202 EXOC7Q9UPT5 735 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 PTCH2Q9Y6C5 1203 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 NRCAMQ92823 1304 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 A0A1B0GTH6 734 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 CLIC2O15247 247 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 NR3C1P04150 777 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 NR2F2P24468 414 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 RPL13P26373 211 aaKnown RBP12.32□□□□□ -0.44
USP3-218ENST00000560202 CDC25BP30305 580 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 CLCN3P51790 818 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 LAMTOR4Q0VGL1 99 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 NFIL3Q16649 462 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.32□□□□□ -0.44
USP3-218ENST00000560202 MTG1Q9BT17 334 aaPredicted RBP12.32□□□□□ -0.44
USP3-218ENST00000560202 AGPAT3Q9NRZ7 376 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 TAB2Q9NYJ8 693 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 ASAP2O43150 1006 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 GNA14O95837 355 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 TPM3P06753 285 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 SRGAP2CP0DJJ0 459 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 TMOD1P28289 359 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 COPB1P53618 953 aaKnown RBP12.31□□□□□ -0.44
USP3-218ENST00000560202 SNRPFP62306 86 aaKnown RBP12.31□□□□□ -0.44
USP3-218ENST00000560202 FILIP1LQ4L180 1135 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 CXCL17Q6UXB2 119 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 TAS1R3Q7RTX0 852 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 RHPN2Q8IUC4 686 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 KLHDC9Q8NEP7 349 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 PPP1R13LQ8WUF5 828 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 LMBR1Q8WVP7 490 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 VPS16Q9H269 839 aa12.31□□□□□ -0.44
USP3-218ENST00000560202 HMX1Q9NP08 348 aaPredicted RBP12.31□□□□□ -0.44
USP3-218ENST00000560202 CGNQ9P2M7 1197 aaKnown RBP12.31□□□□□ -0.44
USP3-218ENST00000560202 K7ERI5 159 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 N4BP3O15049 544 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 MSCO60682 206 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 GJB1P08034 283 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 CST5P28325 142 aaPredicted RBP12.3□□□□□ -0.44
USP3-218ENST00000560202 MTIF2P46199 727 aaKnown RBP12.3□□□□□ -0.44
USP3-218ENST00000560202 EFNA5P52803 228 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 STRN3Q13033 797 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 TFDP1Q14186 410 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 MYBPC2Q14324 1141 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 NR1I3Q14994 352 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 CCSAPQ6IQ19 270 aaPredicted RBP12.3□□□□□ -0.44
USP3-218ENST00000560202 NFRKBQ6P4R8 1299 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 DRC7Q8IY82 874 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 RNF149Q8NC42 400 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 TUBGCP2Q9BSJ2 902 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 TMEM134Q9H6X4 195 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 INTS13Q9NVM9 706 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 DMAC2Q9NW81 257 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 PRDM4Q9UKN5 801 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 PTPN22Q9Y2R2 807 aa12.3□□□□□ -0.44
USP3-218ENST00000560202 MBLAC1A4D2B0 266 aaPredicted RBP12.29□□□□□ -0.44
USP3-218ENST00000560202 TISP43B9A030 160 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 MYCNP04198 464 aaPredicted RBP12.29□□□□□ -0.44
USP3-218ENST00000560202 ASGR1P07306 291 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 MARSP56192 900 aaKnown RBP12.29□□□□□ -0.44
USP3-218ENST00000560202 ADAM17P78536 824 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 KCNA10Q16322 511 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 CCDC40Q4G0X9 1142 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 CDCA2Q69YH5 1023 aaPredicted RBP12.29□□□□□ -0.44
USP3-218ENST00000560202 RNF180Q86T96 592 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 SLC9A9Q8IVB4 645 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 ZBTB8OSQ8IWT0 167 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 C12orf56Q8IXR9 622 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 KIAA0319LQ8IZA0 1049 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 C7orf31Q8N865 590 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 SPC24Q8NBT2 197 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 SH3TC2Q8TF17 1288 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 TMEM174Q8WUU8 243 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 NLRP4Q96MN2 994 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 C2orf40Q9H1Z8 148 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 HDAC6Q9UBN7 1215 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 AKT3Q9Y243 479 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 PHLPP2Q6ZVD8 1323 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 MYH11P35749 1972 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 C17orf102A2RUQ5 167 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 ANKRD63C9JTQ0 380 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 SLC16A3O15427 465 aaKnown RBP12.29□□□□□ -0.44
USP3-218ENST00000560202 TEX33O43247 280 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 AKAP3O75969 853 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 GNAT1P11488 350 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 CASP4P49662 377 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 CYP2J2P51589 502 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 POU5F1BQ06416 359 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 HIC1Q14526 733 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 CEP135Q66GS9 1140 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 LHX8Q68G74 356 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 PCSK9Q8NBP7 692 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms