RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 CALCRLQ16602 461 aa13.7□□□□□ -0.22
SPG11-219ENST00000559822 ME3Q16798 604 aa13.7□□□□□ -0.22
SPG11-219ENST00000559822 TMEM184AQ6ZMB5 413 aa13.7□□□□□ -0.22
SPG11-219ENST00000559822 KSR1Q8IVT5 923 aa13.7□□□□□ -0.22
SPG11-219ENST00000559822 NECAB1Q8N987 351 aa13.7□□□□□ -0.22
SPG11-219ENST00000559822 NSUN7Q8NE18 718 aaKnown RBP13.7□□□□□ -0.22
SPG11-219ENST00000559822 CCDC43Q96MW1 224 aaKnown RBP13.7□□□□□ -0.22
SPG11-219ENST00000559822 IFT122Q9HBG6 1241 aa13.7□□□□□ -0.22
SPG11-219ENST00000559822 AGPAT5Q9NUQ2 364 aa13.7□□□□□ -0.22
SPG11-219ENST00000559822 PCDHA12Q9UN75 941 aa13.7□□□□□ -0.22
SPG11-219ENST00000559822 USP15Q9Y4E8 981 aaPredicted RBP13.7□□□□□ -0.22
SPG11-219ENST00000559822 NEMFO60524 1076 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 ZC3H11AO75152 810 aaKnown RBP eCLIP13.69□□□□□ -0.22
SPG11-219ENST00000559822 FDPSP14324 419 aaKnown RBP13.69□□□□□ -0.22
SPG11-219ENST00000559822 PBX3P40426 434 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 BCAR1P56945 870 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 CYP4A11Q02928 519 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 RNASELQ05823 741 aaKnown RBP13.69□□□□□ -0.22
SPG11-219ENST00000559822 SPIRE1Q08AE8 756 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 NCBP1Q09161 790 aaKnown RBP13.69□□□□□ -0.22
SPG11-219ENST00000559822 LAMTOR4Q0VGL1 99 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 GIT2Q14161 759 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 MXD4Q14582 209 aaPredicted RBP13.69□□□□□ -0.22
SPG11-219ENST00000559822 EMC2Q15006 297 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 XKR9Q5GH70 373 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 HERC4Q5GLZ8 1057 aaPredicted RBP13.69□□□□□ -0.22
SPG11-219ENST00000559822 NOMO2Q5JPE7 1267 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 EARS2Q5JPH6 523 aaKnown RBP13.69□□□□□ -0.22
SPG11-219ENST00000559822 RNF135Q8IUD6 432 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 DIS3L2Q8IYB7 885 aaKnown RBP13.69□□□□□ -0.22
SPG11-219ENST00000559822 TMEM87AQ8NBN3 555 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 URGCPQ8TCY9 931 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 PRPF31Q8WWY3 499 aaKnown RBP13.69□□□□□ -0.22
SPG11-219ENST00000559822 CASP10Q92851 521 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 TNFRSF25Q93038 417 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 DYDC2Q96IM9 177 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 MTRQ99707 1265 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 PHF7Q9BWX1 381 aaPredicted RBP13.69□□□□□ -0.22
SPG11-219ENST00000559822 RGL1Q9NZL6 768 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 WRAP73Q9P2S5 460 aaPredicted RBP13.69□□□□□ -0.22
SPG11-219ENST00000559822 STK39Q9UEW8 545 aa13.69□□□□□ -0.22
SPG11-219ENST00000559822 CNTNAP2Q9UHC6 1331 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 HIDE1A8MVS5 230 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 ERLIN2O94905 339 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 SRGAP2CP0DJJ0 459 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 CA8P35219 290 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 TECP42680 631 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 KCNC3Q14003 757 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 TFDP1Q14186 410 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 CTTNQ14247 550 aaKnown RBP13.68□□□□□ -0.22
SPG11-219ENST00000559822 SAFBQ15424 915 aaKnown RBP eCLIP13.68□□□□□ -0.22
SPG11-219ENST00000559822 ANKRD54Q6NXT1 300 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 FERMT3Q86UX7 667 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 TPH2Q8IWU9 490 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 MRPL43Q8N983 215 aaKnown RBP13.68□□□□□ -0.22
SPG11-219ENST00000559822 RNF149Q8NC42 400 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 CNNM3Q8NE01 707 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 VN1R2Q8NFZ6 395 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 LPPQ93052 612 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 TMEM143Q96AN5 459 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 ANKEF1Q9NU02 776 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 TBC1D13Q9NVG8 400 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 KANSL3Q9P2N6 904 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 MUTYHQ9UIF7 546 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 INPP5FQ9Y2H2 1132 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 PCDHB2Q9Y5E7 798 aa13.68□□□□□ -0.22
SPG11-219ENST00000559822 FAM205CA6NFA0 338 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 BTBD18B2RXH4 712 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 LOC730098B7Z3J9 87 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 DGAT1O75907 488 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 SLITRK3O94933 977 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 LYPLA2O95372 231 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 LARGE1O95461 756 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 AXLP30530 894 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 CBX2Q14781 532 aaPredicted RBP13.67□□□□□ -0.22
SPG11-219ENST00000559822 TPRNQ4KMQ1 711 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 ZNF579Q8NAF0 562 aaKnown RBP13.67□□□□□ -0.22
SPG11-219ENST00000559822 SUSD6Q92537 303 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 CCDC51Q96ER9 411 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 EIF2AK1Q9BQI3 630 aaKnown RBP13.67□□□□□ -0.22
SPG11-219ENST00000559822 TTC12Q9H892 705 aaPredicted RBP13.67□□□□□ -0.22
SPG11-219ENST00000559822 RSAD1Q9HA92 442 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 UBN1Q9NPG3 1134 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 BMP2KQ9NSY1 1161 aaPredicted RBP13.67□□□□□ -0.22
SPG11-219ENST00000559822 ARID2Q68CP9 1835 aa13.67□□□□□ -0.22
SPG11-219ENST00000559822 C2orf71A6NGG8 1288 aa13.66□□□□□ -0.22
SPG11-219ENST00000559822 NT5C1B-RDH14C9J2C7 533 aa13.66□□□□□ -0.22
SPG11-219ENST00000559822 DTNBO60941 627 aa13.66□□□□□ -0.22
SPG11-219ENST00000559822 OFD1O75665 1012 aa13.66□□□□□ -0.22
SPG11-219ENST00000559822 RBM10P98175 930 aaKnown RBP13.66□□□□□ -0.22
SPG11-219ENST00000559822 POU5F1BQ06416 359 aa13.66□□□□□ -0.22
SPG11-219ENST00000559822 LONRF3Q496Y0 759 aa13.66□□□□□ -0.22
SPG11-219ENST00000559822 CES5AQ6NT32 575 aa13.66□□□□□ -0.22
SPG11-219ENST00000559822 LLGL2Q6P1M3 1020 aa13.66□□□□□ -0.22
SPG11-219ENST00000559822 MRPL10Q7Z7H8 261 aaKnown RBP13.66□□□□□ -0.22
SPG11-219ENST00000559822 DDX53Q86TM3 631 aaKnown RBP13.66□□□□□ -0.22
SPG11-219ENST00000559822 VPS52Q8N1B4 723 aa13.66□□□□□ -0.22
SPG11-219ENST00000559822 IGSF21Q96ID5 467 aa13.66□□□□□ -0.22
SPG11-219ENST00000559822 MFSD14AQ96MC6 490 aa13.66□□□□□ -0.22
SPG11-219ENST00000559822 FAM193BQ96PV7 902 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms