RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 STK33Q9BYT3 514 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 UBXN6Q9BZV1 441 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 TOPORSQ9NS56 1045 aaPredicted RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 APEX2Q9UBZ4 518 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 SEPT9Q9UHD8 586 aaPredicted RBP11.55□□□□□ -0.56
CUX1-217ENST00000558836 PCDHGC5Q9Y5F6 944 aa11.55□□□□□ -0.56
CUX1-217ENST00000558836 GTPBP10A4D1E9 387 aaKnown RBP11.54□□□□□ -0.56
CUX1-217ENST00000558836 TUBB4BP68371 445 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 TRADDQ15628 312 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 CATSPERGQ6ZRH7 1159 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 SEPT14Q6ZU15 432 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 XXYLT1Q8NBI6 393 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 LMO3Q8TAP4 145 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 SGIP1Q9BQI5 828 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 TMEM206Q9H813 350 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 TMOD4Q9NZQ9 345 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 BCCIPQ9P287 314 aaKnown RBP eCLIP11.54□□□□□ -0.56
CUX1-217ENST00000558836 BZW2Q9Y6E2 419 aaKnown RBP11.54□□□□□ -0.56
CUX1-217ENST00000558836 BRCA1P38398 1863 aaKnown RBP11.54□□□□□ -0.56
CUX1-217ENST00000558836 DNAH12Q6ZR08 3092 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 SPDYE16A6NNV3 312 aaPredicted RBP11.54□□□□□ -0.56
CUX1-217ENST00000558836 KCNA2P16389 499 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 PRLRP16471 622 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 PRKCIP41743 596 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 GTF2BQ00403 316 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 KRT76Q01546 638 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 CCNI2Q6ZMN8 369 aaPredicted RBP11.54□□□□□ -0.56
CUX1-217ENST00000558836 RPGRIP1Q96KN7 1286 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 TEX13BQ9BXU2 312 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 VPS18Q9P253 973 aa11.54□□□□□ -0.56
CUX1-217ENST00000558836 BRCA2P51587 3418 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 PFASO15067 1338 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 ADGRA3Q8IWK6 1321 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 IGSF9BQ9UPX0 1349 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 CALCAP01258 141 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 H2AFZP0C0S5 128 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 CNGA1P29973 690 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 JAK3P52333 1124 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 MTERF2Q49AM1 385 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 CFAP221Q4G0U5 840 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 TAF3Q5VWG9 929 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 MOB2Q70IA6 237 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 H2AFVQ71UI9 128 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 VPS36Q86VN1 386 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 APOBEC3FQ8IUX4 373 aaKnown RBP11.53□□□□□ -0.56
CUX1-217ENST00000558836 KLHL7Q8IXQ5 586 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 TXLNBQ8N3L3 684 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 TMEM161BQ8NDZ6 487 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 OLIG1Q8TAK6 271 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 GOLGA5Q8TBA6 731 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 JPH1Q9HDC5 661 aaPredicted RBP11.53□□□□□ -0.56
CUX1-217ENST00000558836 KMT5AQ9NQR1 393 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 TBX20Q9UMR3 447 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 CD2APQ9Y5K6 639 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 UBE4BO95155 1302 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 ADM5C9JUS6 153 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 USP2O75604 605 aaPredicted RBP11.53□□□□□ -0.56
CUX1-217ENST00000558836 DLATP10515 647 aaKnown RBP11.53□□□□□ -0.56
CUX1-217ENST00000558836 FERP16591 822 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 VGLL4Q14135 290 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 PPP2R5AQ15172 486 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 NFIL3Q16649 462 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 LMBRD2Q68DH5 695 aaPredicted RBP11.53□□□□□ -0.56
CUX1-217ENST00000558836 DAAM2Q86T65 1068 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 ANKRD35Q8N283 1001 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 INPP4AQ96PE3 977 aaPredicted RBP11.53□□□□□ -0.56
CUX1-217ENST00000558836 KRT12Q99456 494 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 SELENOOQ9BVL4 669 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 AP1M1Q9BXS5 423 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 TMEM117Q9H0C3 514 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 ACAD9Q9H845 621 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 MAP3K20Q9NYL2 800 aaKnown RBP11.53□□□□□ -0.56
CUX1-217ENST00000558836 AFG3L2Q9Y4W6 797 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 CEP350Q5VT06 3117 aa11.53□□□□□ -0.56
CUX1-217ENST00000558836 LYPLA2O95372 231 aa11.52□□□□□ -0.56
CUX1-217ENST00000558836 GLI1P08151 1106 aa11.52□□□□□ -0.56
CUX1-217ENST00000558836 ACTR2P61160 394 aa11.52□□□□□ -0.56
CUX1-217ENST00000558836 DMP1Q13316 513 aaPredicted RBP11.52□□□□□ -0.56
CUX1-217ENST00000558836 RPS6KA1Q15418 735 aa11.52□□□□□ -0.56
CUX1-217ENST00000558836 SNRNP35Q16560 246 aaKnown RBP11.52□□□□□ -0.56
CUX1-217ENST00000558836 C8orf74Q6P047 294 aa11.52□□□□□ -0.56
CUX1-217ENST00000558836 INTS8Q75QN2 995 aaKnown RBP11.52□□□□□ -0.56
CUX1-217ENST00000558836 SLC9A9Q8IVB4 645 aa11.52□□□□□ -0.56
CUX1-217ENST00000558836 TPCN2Q8NHX9 752 aa11.52□□□□□ -0.56
CUX1-217ENST00000558836 TMEM143Q96AN5 459 aa11.52□□□□□ -0.56
CUX1-217ENST00000558836 ARHGEF26Q96DR7 871 aa11.52□□□□□ -0.56
CUX1-217ENST00000558836 FBXL5Q9UKA1 691 aa11.52□□□□□ -0.56
CUX1-217ENST00000558836 FAN1Q9Y2M0 1017 aa11.52□□□□□ -0.56
CUX1-217ENST00000558836 RLFQ13129 1914 aa11.52□□□□□ -0.56
CUX1-217ENST00000558836 CEP104O60308 925 aa11.52□□□□□ -0.57
CUX1-217ENST00000558836 TNFAIP3P21580 790 aa11.52□□□□□ -0.57
CUX1-217ENST00000558836 SFNP31947 248 aa11.52□□□□□ -0.57
CUX1-217ENST00000558836 SMTNP53814 917 aa11.52□□□□□ -0.57
CUX1-217ENST00000558836 PRKCEQ02156 737 aa11.52□□□□□ -0.57
CUX1-217ENST00000558836 PPM1KQ8N3J5 372 aa11.52□□□□□ -0.57
CUX1-217ENST00000558836 MMGT1Q8N4V1 131 aa11.52□□□□□ -0.57
CUX1-217ENST00000558836 IFT81Q8WYA0 676 aa11.52□□□□□ -0.57
CUX1-217ENST00000558836 POMGNT1Q8WZA1 660 aa11.52□□□□□ -0.57
CUX1-217ENST00000558836 SEMA4DQ92854 862 aa11.52□□□□□ -0.57
CUX1-217ENST00000558836 THAP2Q9H0W7 228 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms