RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 NLRP7Q8WX94 980 aa11.31□□□□□ -0.6
USP3-207ENST00000558218 PPP2R3CQ969Q6 453 aa11.31□□□□□ -0.6
USP3-207ENST00000558218 PABPC5Q96DU9 382 aaKnown RBP11.31□□□□□ -0.6
USP3-207ENST00000558218 CEP170P1Q96L14 293 aa11.31□□□□□ -0.6
USP3-207ENST00000558218 MTMR9Q96QG7 549 aa11.31□□□□□ -0.6
USP3-207ENST00000558218 KIF2CQ99661 725 aa11.31□□□□□ -0.6
USP3-207ENST00000558218 TMEM117Q9H0C3 514 aa11.31□□□□□ -0.6
USP3-207ENST00000558218 DHX33Q9H6R0 707 aaKnown RBP11.31□□□□□ -0.6
USP3-207ENST00000558218 UBE2ZQ9H832 354 aaPredicted RBP11.31□□□□□ -0.6
USP3-207ENST00000558218 TTC12Q9H892 705 aaPredicted RBP11.31□□□□□ -0.6
USP3-207ENST00000558218 DAXXQ9UER7 740 aaPredicted RBP11.31□□□□□ -0.6
USP3-207ENST00000558218 PCDHB12Q9Y5F1 795 aa11.31□□□□□ -0.6
USP3-207ENST00000558218 MRPL42Q9Y6G3 142 aaKnown RBP11.31□□□□□ -0.6
USP3-207ENST00000558218 TTC28Q96AY4 2481 aa11.31□□□□□ -0.6
USP3-207ENST00000558218 PRUNE2Q8WUY3 3088 aa11.31□□□□□ -0.6
USP3-207ENST00000558218 COL4A4P53420 1690 aaPredicted RBP11.3□□□□□ -0.6
USP3-207ENST00000558218 GRM6O15303 877 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 SFPQP23246 707 aaKnown RBP eCLIP11.3□□□□□ -0.6
USP3-207ENST00000558218 TRAPPC10P48553 1259 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 POU5F1BQ06416 359 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 RABEP1Q15276 862 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 SRGAP1Q7Z6B7 1085 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 ECHDC2Q86YB7 292 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 SPPL3Q8TCT6 385 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 C8orf76Q96K31 380 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 SCLT1Q96NL6 688 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 UHRF1Q96T88 793 aaPredicted RBP11.3□□□□□ -0.6
USP3-207ENST00000558218 LXNQ9BS40 222 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 ANKEF1Q9NU02 776 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 PLA2G2EQ9NZK7 142 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 FAM50BQ9Y247 325 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 UNC80Q8N2C7 3258 aa11.3□□□□□ -0.6
USP3-207ENST00000558218 BRWD1Q9NSI6 2320 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 A0A087WZ62 844 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 FSD2A1L4K1 749 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 TBKBP1A7MCY6 615 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 NEMFO60524 1076 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 ZNF623O75123 536 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 LAG3P18627 525 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 FECHP22830 423 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 POLGP54098 1239 aaPredicted RBP11.29□□□□□ -0.6
USP3-207ENST00000558218 ST3GAL1Q11201 340 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 DRP2Q13474 957 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 MXD4Q14582 209 aaPredicted RBP11.29□□□□□ -0.6
USP3-207ENST00000558218 CTC1Q2NKJ3 1217 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 FAM102BQ5T8I3 360 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 SMYD5Q6GMV2 418 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 NCAPH2Q6IBW4 605 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 ZNF598Q86UK7 904 aaKnown RBP11.29□□□□□ -0.6
USP3-207ENST00000558218 RHPN2Q8IUC4 686 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 TPH2Q8IWU9 490 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 ABI1Q8IZP0 508 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 FAM184AQ8NB25 1140 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 KLHL23Q8NBE8 558 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 TTC13Q8NBP0 860 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 PSPC1Q8WXF1 523 aaKnown RBP11.29□□□□□ -0.6
USP3-207ENST00000558218 PPP1R16BQ96T49 567 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 EIF2AK1Q9BQI3 630 aaKnown RBP11.29□□□□□ -0.6
USP3-207ENST00000558218 FDXACB1Q9BRP7 624 aaPredicted RBP11.29□□□□□ -0.6
USP3-207ENST00000558218 UPF2Q9HAU5 1272 aaKnown RBP11.29□□□□□ -0.6
USP3-207ENST00000558218 TYW1Q9NV66 732 aaKnown RBP11.29□□□□□ -0.6
USP3-207ENST00000558218 RGL1Q9NZL6 768 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 LZTS1Q9Y250 596 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 KIF3AQ9Y496 699 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 COL4A3BPQ9Y5P4 624 aa11.29□□□□□ -0.6
USP3-207ENST00000558218 FNDC1Q4ZHG4 1894 aaPredicted RBP11.29□□□□□ -0.6
USP3-207ENST00000558218 MYO7AQ13402 2215 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 DGAT1O75907 488 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 ITGB1P05556 798 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 MUTP22033 750 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 TXKP42681 527 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 MCM2P49736 904 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 RAB27AP51159 221 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 KCNQ1P51787 676 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 NPEPPSP55786 919 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 PLCB3Q01970 1234 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 CAMK1Q14012 370 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 XKR9Q5GH70 373 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 TCEAL5Q5H9L2 206 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 CCDC83Q8IWF9 413 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 PRPF31Q8WWY3 499 aaKnown RBP11.28□□□□□ -0.6
USP3-207ENST00000558218 DYDC2Q96IM9 177 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 CASD1Q96PB1 797 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 MRPL9Q9BYD2 267 aaKnown RBP11.28□□□□□ -0.6
USP3-207ENST00000558218 IFT122Q9HBG6 1241 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 TUFT1Q9NNX1 390 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 ALG13Q9NP73 1137 aaKnown RBP11.28□□□□□ -0.6
USP3-207ENST00000558218 WRAP73Q9P2S5 460 aaPredicted RBP11.28□□□□□ -0.6
USP3-207ENST00000558218 PUF60Q9UHX1 559 aaKnown RBP11.28□□□□□ -0.6
USP3-207ENST00000558218 EYSQ5T1H1 3165 aa11.28□□□□□ -0.6
USP3-207ENST00000558218 TCF20Q9UGU0 1960 aaKnown RBP11.27□□□□□ -0.61
USP3-207ENST00000558218 TMEM150BA6NC51 233 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 RBAK-RBAKDNI3L0D1 243 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 KCNA5P22460 613 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 U2AF2P26368 475 aaKnown RBP eCLIP11.27□□□□□ -0.612e-8■■□□□ 13.8
USP3-207ENST00000558218 AXLP30530 894 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 PPM1AP35813 382 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 PHKA2P46019 1235 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 NCBP1Q09161 790 aaKnown RBP11.27□□□□□ -0.61
USP3-207ENST00000558218 CTTNQ14247 550 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms