RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 DCAF12L1Q5VU92 463 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 HS2ST1Q7LGA3 356 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 LENG9Q96B70 501 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 RPS6KC1Q96S38 1066 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 AMNQ9BXJ7 453 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 EPB41L4BQ9H329 900 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 OSGEPQ9NPF4 335 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 SAMD15Q9P1V8 674 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 PHF20L1A8MW92 1017 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 DCDC2CA8MYV0 355 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 FAM13AO94988 1023 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 CYP3A4P08684 503 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 VCAM1P19320 739 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 PRR5LQ6MZQ0 368 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 TAOK1Q7L7X3 1001 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 BHMT2Q9H2M3 363 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 KCND2Q9NZV8 630 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 APEX2Q9UBZ4 518 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 PNMA2Q9UL42 364 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 FRMD4BQ9Y2L6 1034 aa17.6■□□□□ 0.41
SHMT2-232ENST00000557487 LOC102724159A0A0B4J2E5 919 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 CHN1P15882 459 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 PRPF4BQ13523 1007 aaKnown RBP17.59■□□□□ 0.41
SHMT2-232ENST00000557487 RIPK1Q13546 671 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 PWP2Q15269 919 aaKnown RBP17.59■□□□□ 0.41
SHMT2-232ENST00000557487 ZDHHC24Q6UX98 284 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 TBC1D16Q8TBP0 767 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 ATXN2LQ8WWM7 1075 aaKnown RBP17.59■□□□□ 0.41
SHMT2-232ENST00000557487 ROPN1BQ9BZX4 212 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-232ENST00000557487 COA1Q9GZY4 146 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 ROPN1Q9HAT0 212 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-232ENST00000557487 HAUS2Q9NVX0 235 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 VAV3Q9UKW4 847 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 TRPC6Q9Y210 931 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 MEIS1O00470 390 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 BCRP11274 1271 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 CTNNA2P26232 953 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 PTPROQ16827 1216 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 MFSD5Q6N075 450 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 RINT1Q6NUQ1 792 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 GJB7Q6PEY0 223 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 CRELD2Q6UXH1 353 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-232ENST00000557487 CLEC10AQ8IUN9 316 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 SLC9A9Q8IVB4 645 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 CCHCR1Q8TD31 782 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 EIF2AK1Q9BQI3 630 aaKnown RBP17.59■□□□□ 0.41
SHMT2-232ENST00000557487 RUSC1Q9BVN2 902 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 INTS2Q9H0H0 1204 aaKnown RBP17.59■□□□□ 0.41
SHMT2-232ENST00000557487 DMAC2Q9NW81 257 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 SLC12A4Q9UP95 1085 aa17.59■□□□□ 0.41
SHMT2-232ENST00000557487 ZMYM2Q9UBW7 1377 aa17.58■□□□□ 0.41
SHMT2-232ENST00000557487 MPHOSPH10O00566 681 aaKnown RBP17.58■□□□□ 0.4
SHMT2-232ENST00000557487 CLIC2O15247 247 aa17.58■□□□□ 0.4
SHMT2-232ENST00000557487 PTGIRP43119 386 aa17.58■□□□□ 0.4
SHMT2-232ENST00000557487 TRAF1Q13077 416 aa17.58■□□□□ 0.4
SHMT2-232ENST00000557487 TNFAIP8L3Q5GJ75 292 aa17.58■□□□□ 0.4
SHMT2-232ENST00000557487 CYFIP1Q7L576 1253 aa17.58■□□□□ 0.4
SHMT2-232ENST00000557487 TRIM31Q9BZY9 425 aa17.58■□□□□ 0.4
SHMT2-232ENST00000557487 ATP6V0A4Q9HBG4 840 aa17.58■□□□□ 0.4
SHMT2-232ENST00000557487 PARVGQ9HBI0 331 aa17.58■□□□□ 0.4
SHMT2-232ENST00000557487 GOPCQ9HD26 462 aa17.58■□□□□ 0.4
SHMT2-232ENST00000557487 DDX4Q9NQI0 724 aaKnown RBP17.58■□□□□ 0.4
SHMT2-232ENST00000557487 INTS9Q9NV88 658 aaKnown RBP17.58■□□□□ 0.4
SHMT2-232ENST00000557487 ODF2LQ9ULJ1 636 aa17.58■□□□□ 0.4
SHMT2-232ENST00000557487 TPX2Q9ULW0 747 aaKnown RBP17.58■□□□□ 0.4
SHMT2-232ENST00000557487 P4HA2O15460 535 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 MTA2O94776 668 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 ALAS1P13196 640 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 RARGP13631 454 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 HOXA10P31260 410 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-232ENST00000557487 ELF1P32519 619 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 PLTPP55058 493 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 CYP1B1Q16678 543 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 SLFN13Q68D06 897 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 DNAAF5Q86Y56 855 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 PROCA1Q8NCQ7 364 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-232ENST00000557487 AGPAT1Q99943 283 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 PLCD4Q9BRC7 762 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 GPR88Q9GZN0 384 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 WNT8AQ9H1J5 351 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 USP40Q9NVE5 1235 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 GRHL1Q9NZI5 618 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 MTUS1Q9ULD2 1270 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 NR2E1Q9Y466 385 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 DCAF8L1A6NGE4 600 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 RSPH10B2B2RC85 870 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 MSH4O15457 936 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 RSPH10BP0C881 870 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 DPEP1P16444 411 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 ZNF131P52739 623 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 MYL7Q01449 175 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 SEL1L2Q5TEA6 688 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 HHIPL2Q6UWX4 724 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 FBXO11Q86XK2 927 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 MYCT1Q8N699 235 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 GBP7Q8N8V2 638 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-232ENST00000557487 RNF25Q96BH1 459 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-232ENST00000557487 CRAMP1Q96RY5 1269 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 SELENOSQ9BQE4 189 aa17.57■□□□□ 0.4
SHMT2-232ENST00000557487 ADAM7Q9H2U9 754 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms