RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-238	ENST00000556288	TMED8	Q6PL24	325 aa	Predicted RBP	5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	CENPQ	Q7L2Z9	268 aa	Predicted RBP	5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	FASTKD5	Q7L8L6	764 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	TMPRSS7	Q7RTY8	843 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	TMC3	Q7Z5M5	1100 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	TSPYL5	Q86VY4	417 aa	Predicted RBP	5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	WFDC3	Q8IUB2	231 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	CREG2	Q8IUH2	290 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	CCAR1	Q8IX12	1150 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	SLC44A5	Q8NCS7	719 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	BRI3BP	Q8WY22	251 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	PTPN18	Q99952	460 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	R3HDML	Q9H3Y0	253 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	CARS2	Q9HA77	564 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	CWC22	Q9HCG8	908 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	INCENP	Q9NQS7	918 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	HELLS	Q9NRZ9	838 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	LMCD1	Q9NZU5	365 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	CPA4	Q9UI42	421 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	PCDHB10	Q9UN67	800 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	OAS3	Q9Y6K5	1087 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	DDX60L	Q5H9U9	1706 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288	MYH7B	A7E2Y1	1941 aa		5.5	□□□□□ -1.53
ATXN3-238	ENST00000556288		A0A0D9SFI3	127 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	SHISA3	A0PJX4	238 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	CCDC85C	A6NKD9	419 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	HIP1	O00291	1037 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	CXCL11	O14625	94 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	RANBP6	O60518	1105 aa	Known RBP	5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	FKTN	O75072	461 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	PRDM1	O75626	825 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	CYP2C8	P10632	490 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	FUT4	P22083	530 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	HAND2	P61296	217 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	CRHR2	Q13324	411 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	FAM47A	Q5JRC9	791 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	NOL9	Q5SY16	702 aa	Known RBP	5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	AXDND1	Q5T1B0	1012 aa	Predicted RBP	5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	PPFIBP1	Q86W92	1011 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	C7orf61	Q8IZ16	206 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	ABI1	Q8IZP0	508 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	FAM43A	Q8N2R8	423 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	ENOX1	Q8TC92	643 aa	Known RBP	5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	SMCR8	Q8TEV9	937 aa	Predicted RBP	5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	RUFY2	Q8WXA3	655 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	TANGO6	Q9C0B7	1094 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	ZNF287	Q9HBT7	754 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	PRKAG3	Q9UGI9	489 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	SWAP70	Q9UH65	585 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	DUSP13	Q9UII6	198 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	ZBTB21	Q9ULJ3	1066 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	AFG3L2	Q9Y4W6	797 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	PCDHB12	Q9Y5F1	795 aa		5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	RPAP1	Q9BWH6	1393 aa	Predicted RBP	5.49	□□□□□ -1.53
ATXN3-238	ENST00000556288	SALL3	Q9BXA9	1300 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	PLXNB2	O15031	1838 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	PARP14	Q460N5	1801 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	CEP350	Q5VT06	3117 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	MCM3AP	O60318	1980 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	ATRNL1	Q5VV63	1379 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	C19orf81	C9J6K1	198 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	ZNF213	O14771	459 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	ESR1	P03372	595 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	TSPY3	P0CV98	308 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	TSPY8	P0CW00	308 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	AKR1B1	P15121	316 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	SHMT1	P34896	483 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	IRX3	P78415	501 aa	Predicted RBP	5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	SLC7A5	Q01650	507 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	TFAP4	Q01664	338 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	SP3	Q02447	781 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	PPARA	Q07869	468 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	PABPC4	Q13310	644 aa	Known RBP eCLIP	5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	ARHGEF6	Q15052	776 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	GAB4	Q2WGN9	574 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	TREML2	Q5T2D2	321 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	VPS53	Q5VIR6	699 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	WDR78	Q5VTH9	848 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	LARP1B	Q659C4	914 aa	Known RBP	5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	TATDN1	Q6P1N9	297 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	SLC23A3	Q6PIS1	610 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	CD99L2	Q8TCZ2	262 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	ACER1	Q8TDN7	264 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	PAGR1	Q9BTK6	254 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	PRDM7	Q9NQW5	492 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	CHST7	Q9NS84	486 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	GFOD1	Q9NXC2	390 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	SAGE1	Q9NXZ1	904 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	ACTR10	Q9NZ32	417 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	ARPP21	Q9UBL0	812 aa	Predicted RBP	5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	CLIP2	Q9UDT6	1046 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	R3HCC1	Q9Y3T6	440 aa	Known RBP	5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	CTDP1	Q9Y5B0	961 aa	Predicted RBP	5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	THSD7B	Q9C0I4	1608 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	CCDC171	Q6TFL3	1326 aa		5.48	□□□□□ -1.53
ATXN3-238	ENST00000556288	LOC285556	D6RIA3	1793 aa		5.47	□□□□□ -1.53
ATXN3-238	ENST00000556288		A0A0G2JLL6	359 aa	Predicted RBP	5.47	□□□□□ -1.53
ATXN3-238	ENST00000556288	TSPY2	A6NKD2	308 aa		5.47	□□□□□ -1.53
ATXN3-238	ENST00000556288	MEIS1	O00470	390 aa		5.47	□□□□□ -1.53
ATXN3-238	ENST00000556288	SIGLEC6	O43699	453 aa		5.47	□□□□□ -1.53

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