RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 TSHZ1Q6ZSZ6 1077 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 TMEM199Q8N511 208 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 USP38Q8NB14 1042 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 TMEM161BQ8NDZ6 487 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 ERCC4Q92889 916 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-209ENST00000553949 BADQ92934 168 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 HPS3Q969F9 1004 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 FIZ1Q96SL8 496 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 INO80BQ9C086 356 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-209ENST00000553949 NUP62CLQ9H1M0 184 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 MINDY3Q9H8M7 445 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 AGO3Q9H9G7 860 aaKnown RBP13.5□□□□□ -0.25
SHMT2-209ENST00000553949 MRPL44Q9H9J2 332 aaKnown RBP13.5□□□□□ -0.25
SHMT2-209ENST00000553949 OLFML3Q9NRN5 406 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 TBC1D7Q9P0N9 293 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 ARHGAP28Q9P2N2 729 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 NOC2LQ9Y3T9 749 aaKnown RBP13.5□□□□□ -0.25
SHMT2-209ENST00000553949 ALPK3Q96L96 1907 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 DENND3A2RUS2 1198 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 H0YCG3 227 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 RBAK-RBAKDNI3L0D1 243 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 INO80B-WBP1J3KQ70 363 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 K7ENM7 598 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 RPS6KA5O75582 802 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 CXCL10P02778 98 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 MAPTP10636 758 aaKnown RBP13.49□□□□□ -0.25
SHMT2-209ENST00000553949 CSF2RAP15509 400 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 SCP2P22307 547 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 NMT1P30419 496 aaKnown RBP13.49□□□□□ -0.25
SHMT2-209ENST00000553949 PAK2Q13177 524 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 KCNB1Q14721 858 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 FAM26FQ5R3K3 315 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 ZNF720Q7Z2F6 126 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 FAM228AQ86W67 206 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 SLC17A8Q8NDX2 589 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 SPATA20Q8TB22 786 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 SMARCE1Q969G3 411 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 CCDC47Q96A33 483 aaKnown RBP13.49□□□□□ -0.25
SHMT2-209ENST00000553949 CCDC113Q9H0I3 377 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 TMEM134Q9H6X4 195 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 EXOC1Q9NV70 894 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 ST3GAL5Q9UNP4 418 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 PCDHA5Q9Y5H7 936 aa13.49□□□□□ -0.25
SHMT2-209ENST00000553949 PHLPP2Q6ZVD8 1323 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 EVPLQ92817 2033 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 GPR182O15218 404 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 FGFR4P22455 802 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 SFPQP23246 707 aaKnown RBP eCLIP13.48□□□□□ -0.25
SHMT2-209ENST00000553949 CD52P31358 61 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 SARSP49591 514 aaKnown RBP13.48□□□□□ -0.25
SHMT2-209ENST00000553949 GTF2BQ00403 316 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 NFX1Q12986 1120 aaKnown RBP13.48□□□□□ -0.25
SHMT2-209ENST00000553949 PSMD2Q13200 908 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 PCBP1Q15365 356 aaKnown RBP eCLIP13.48□□□□□ -0.25
SHMT2-209ENST00000553949 MAPK6Q16659 721 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 KLHL40Q2TBA0 621 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 PLEKHG4Q58EX7 1191 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 HAUS6Q7Z4H7 955 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 DEFB128Q7Z7B8 93 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 KCNN1Q92952 543 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 VWCEQ96DN2 955 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 GSDMAQ96QA5 445 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 LBHD1Q9BQE6 289 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-209ENST00000553949 FGFBP2Q9BYJ0 223 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 IFIH1Q9BYX4 1025 aaKnown RBP13.48□□□□□ -0.25
SHMT2-209ENST00000553949 FZD8Q9H461 694 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 ST6GALNAC4Q9H4F1 302 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 ERVK-5Q9HDB9 667 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 RMND1Q9NWS8 449 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 PADI3Q9ULW8 664 aa13.48□□□□□ -0.25
SHMT2-209ENST00000553949 K7ERI5 159 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 TSPAN1O60635 241 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 PPP1R37O75864 691 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 ERLIN2O94905 339 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 RHOBTB3O94955 611 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 GCNT3O95395 438 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 PRKCBP05771 671 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 MYBP10242 640 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 ABCD1P33897 745 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 CASP5P51878 434 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 FPGSQ05932 587 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 STRN3Q13033 797 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 STK4Q13043 487 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 PPIGQ13427 754 aaKnown RBP eCLIP13.47□□□□□ -0.253e-10■□□□□ 10.6
SHMT2-209ENST00000553949 AMHR2Q16671 573 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 FAM187BQ17R55 369 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 ZC2HC1CQ53FD0 456 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-209ENST00000553949 CCDC183Q5T5S1 534 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 NT5DC1Q5TFE4 455 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 PPP4R3CPQ6ZMV5 832 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 TAS1R3Q7RTX0 852 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 CATSPER4Q7RTX7 472 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 RPUSD2Q8IZ73 545 aaKnown RBP13.47□□□□□ -0.25
SHMT2-209ENST00000553949 GLIS3Q8NEA6 775 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 SEPT8Q92599 483 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 STRA6Q9BX79 667 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 SLC39A2Q9NP94 309 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 PRMT7Q9NVM4 692 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-209ENST00000553949 KIAA1468Q9P260 1216 aa13.47□□□□□ -0.25
SHMT2-209ENST00000553949 MAN1B1Q9UKM7 699 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms