RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CREBZFQ9NS37 354 aa28.71■■■□□ 2.19
CCDC88C-205ENST00000553403 NRBP2Q9NSY0 501 aa28.71■■■□□ 2.19
CCDC88C-205ENST00000553403 GGPS1O95749 300 aa28.7■■■□□ 2.19
CCDC88C-205ENST00000553403 VAMP7P51809 220 aa28.7■■■□□ 2.19
CCDC88C-205ENST00000553403 POLGP54098 1239 aaPredicted RBP28.7■■■□□ 2.19
CCDC88C-205ENST00000553403 MYL7Q01449 175 aa28.7■■■□□ 2.19
CCDC88C-205ENST00000553403 NAA30Q147X3 362 aaPredicted RBP28.7■■■□□ 2.19
CCDC88C-205ENST00000553403 PCYT2Q99447 389 aa28.7■■■□□ 2.19
CCDC88C-205ENST00000553403 DHX33Q9H6R0 707 aaKnown RBP28.7■■■□□ 2.19
CCDC88C-205ENST00000553403 LUC7LQ9NQ29 371 aaKnown RBP28.7■■■□□ 2.19
CCDC88C-205ENST00000553403 DDX41Q9UJV9 622 aaKnown RBP28.7■■■□□ 2.19
CCDC88C-205ENST00000553403 TRIM49P0CI25 452 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 TRIM49CP0CI26 452 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 ANXA13P27216 316 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 PRKCIP41743 596 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 SOX10P56693 466 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 CBWD6Q4V339 395 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 CBWD3Q5JTY5 395 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 CBWD5Q5RIA9 395 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 IRF2BP2Q7Z5L9 587 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 RDH13Q8NBN7 331 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 MAP7D2Q96T17 732 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 ZNF408Q9H9D4 720 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 TFR2Q9UP52 801 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 PPME1Q9Y570 386 aa28.7■■■□□ 2.18
CCDC88C-205ENST00000553403 EFCAB8A8MWE9 144 aa28.69■■■□□ 2.18
CCDC88C-205ENST00000553403 TADA3O75528 432 aa28.69■■■□□ 2.18
CCDC88C-205ENST00000553403 RFC5P40937 340 aa28.69■■■□□ 2.18
CCDC88C-205ENST00000553403 GTF2A2P52657 109 aa28.69■■■□□ 2.18
CCDC88C-205ENST00000553403 LRRN4CLQ8ND94 238 aa28.69■■■□□ 2.18
CCDC88C-205ENST00000553403 CEP89Q96ST8 783 aa28.69■■■□□ 2.18
CCDC88C-205ENST00000553403 KIFC3Q9BVG8 833 aa28.69■■■□□ 2.18
CCDC88C-205ENST00000553403 INTS2Q9H0H0 1204 aaKnown RBP28.69■■■□□ 2.18
CCDC88C-205ENST00000553403 MLXIPQ9HAP2 919 aa28.69■■■□□ 2.18
CCDC88C-205ENST00000553403 ARHGAP28Q9P2N2 729 aa28.69■■■□□ 2.18
CCDC88C-205ENST00000553403 PASKQ96RG2 1323 aa28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 ANKRD63C9JTQ0 380 aa28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 PMM2O15305 246 aa28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 ITGBL1O95965 494 aaPredicted RBP28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 CNGA1P29973 690 aa28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 STAT5BP51692 787 aa28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 CCNA1P78396 465 aa28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 GFPT1Q06210 699 aaPredicted RBP28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 SLC18A3Q16572 532 aa28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 IQCEQ6IPM2 695 aa28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 GPRC5AQ8NFJ5 357 aa28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 SECISBP2LQ93073 1101 aaKnown RBP28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 MS4A4AQ96JQ5 239 aa28.68■■■□□ 2.18
CCDC88C-205ENST00000553403 TARBP2Q15633 366 aaKnown RBP28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 LY6KQ17RY6 165 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 FMNL3Q8IVF7 1028 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 FAM167AQ96KS9 214 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 PORCNQ9H237 461 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 ADGRA3Q8IWK6 1321 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 ASB14A6NK59 587 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 RFX1P22670 979 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 ADSSP30520 456 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 ENPEPQ07075 957 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 CETN1Q12798 172 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 BRDTQ58F21 947 aaPredicted RBP28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 CELF3Q5SZQ8 465 aaKnown RBP28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 WDR78Q5VTH9 848 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 EEPD1Q7L9B9 569 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 GPIHBP1Q8IV16 184 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 STK33Q9BYT3 514 aa28.67■■■□□ 2.18
CCDC88C-205ENST00000553403 TMEM88BA6NKF7 163 aa28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 CYP2C8P10632 490 aa28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 FERP16591 822 aa28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 GARTP22102 1010 aa28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 TCF7P36402 384 aaPredicted RBP28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 ARL2P36404 184 aa28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 STAT1P42224 750 aa28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 ANKRD23Q86SG2 305 aa28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 CEP112Q8N8E3 955 aa28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 SLC7A3Q8WY07 619 aa28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 NOL12Q9UGY1 213 aaKnown RBP eCLIP28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 AJAP1Q9UKB5 411 aaPredicted RBP28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 V9GYY5 206 aaPredicted RBP28.66■■■□□ 2.18
CCDC88C-205ENST00000553403 EMSYQ7Z589 1322 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 ANO9A1A5B4 782 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 PDHXO00330 501 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 LGR5O75473 907 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 ARIH2O95376 493 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 AMPD2Q01433 879 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 ARID5AQ03989 594 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 ELF2Q15723 593 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 WHAMMP3Q1A5X7 153 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 C10orf76Q5T2E6 689 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 UBXN4Q92575 508 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 FBXL18Q96ME1 805 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 GBA2Q9HCG7 927 aaPredicted RBP28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 DUSP10Q9Y6W6 482 aa28.65■■■□□ 2.18
CCDC88C-205ENST00000553403 TACC1O75410 805 aa28.64■■■□□ 2.18
CCDC88C-205ENST00000553403 NAMPTP43490 491 aa28.64■■■□□ 2.18
CCDC88C-205ENST00000553403 C1orf220Q5T0J3 134 aa28.64■■■□□ 2.18
CCDC88C-205ENST00000553403 SLC39A4Q6P5W5 647 aa28.64■■■□□ 2.18
CCDC88C-205ENST00000553403 TRIM58Q8NG06 486 aa28.64■■■□□ 2.18
CCDC88C-205ENST00000553403 LMO3Q8TAP4 145 aa28.64■■■□□ 2.18
CCDC88C-205ENST00000553403 VTI1AQ96AJ9 217 aa28.64■■■□□ 2.18
CCDC88C-205ENST00000553403 GPR20Q99678 358 aa28.64■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms