RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 TRAIPQ9BWF2 469 aa18.22■□□□□ 0.51
VPS29-207ENST00000549970 C1QTNF1Q9BXJ1 281 aa18.22■□□□□ 0.51
VPS29-207ENST00000549970 MRPL9Q9BYD2 267 aaKnown RBP18.22■□□□□ 0.51
VPS29-207ENST00000549970 MINDY3Q9H8M7 445 aa18.22■□□□□ 0.51
VPS29-207ENST00000549970 AGPAT5Q9NUQ2 364 aa18.22■□□□□ 0.51
VPS29-207ENST00000549970 PUF60Q9UHX1 559 aaKnown RBP18.22■□□□□ 0.51
VPS29-207ENST00000549970 CD207Q9UJ71 328 aa18.22■□□□□ 0.51
VPS29-207ENST00000549970 MEIS3P2A8K0S8 358 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 MBTPS2O43462 519 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 SKIP12755 728 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 PPM1AP35813 382 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 HMGN5P82970 282 aaKnown RBP18.21■□□□□ 0.51
VPS29-207ENST00000549970 SMAD4Q13485 552 aaKnown RBP18.21■□□□□ 0.51
VPS29-207ENST00000549970 SRGAP1Q7Z6B7 1085 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 FERMT3Q86UX7 667 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 FAM184AQ8NB25 1140 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 TCF25Q9BQ70 676 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 XPNPEP1Q9NQW7 623 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 ENTPD7Q9NQZ7 604 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 SH2B1Q9NRF2 756 aaPredicted RBP18.21■□□□□ 0.51
VPS29-207ENST00000549970 SPG21Q9NZD8 308 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 BARX2Q9UMQ3 279 aaPredicted RBP18.21■□□□□ 0.51
VPS29-207ENST00000549970 LZTS1Q9Y250 596 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 INPP5FQ9Y2H2 1132 aa18.21■□□□□ 0.51
VPS29-207ENST00000549970 A0A087WWV3 80 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 FSCN2O14926 492 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 LYPLA2O95372 231 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 GLP2RO95838 553 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 COL9A1P20849 921 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 RAB27AP51159 221 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 KRT17Q04695 432 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 ZP2Q05996 745 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 SMAD2Q15796 467 aaKnown RBP18.2■□□□□ 0.5
VPS29-207ENST00000549970 PDE12Q6L8Q7 609 aaKnown RBP18.2■□□□□ 0.5
VPS29-207ENST00000549970 PIGOQ8TEQ8 1089 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 MSLNLQ96KJ4 702 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 ANKEF1Q9NU02 776 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 CLEC1BQ9P126 229 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 PRKAG3Q9UGI9 489 aa18.2■□□□□ 0.5
VPS29-207ENST00000549970 NT5C1B-RDH14C9J2C7 533 aa18.19■□□□□ 0.5
VPS29-207ENST00000549970 ASAP2O43150 1006 aa18.19■□□□□ 0.5
VPS29-207ENST00000549970 ZC3H11AO75152 810 aaKnown RBP eCLIP18.19■□□□□ 0.5
VPS29-207ENST00000549970 BCAR1P56945 870 aa18.19■□□□□ 0.5
VPS29-207ENST00000549970 RBM10P98175 930 aaKnown RBP18.19■□□□□ 0.5
VPS29-207ENST00000549970 GNL2Q13823 731 aaKnown RBP18.19■□□□□ 0.5
VPS29-207ENST00000549970 ZNF174Q15697 407 aa18.19■□□□□ 0.5
VPS29-207ENST00000549970 GLB1LQ6UWU2 654 aa18.19■□□□□ 0.5
VPS29-207ENST00000549970 ADHFE1Q8IWW8 467 aa18.19■□□□□ 0.5
VPS29-207ENST00000549970 SLC39A11Q8N1S5 342 aa18.19■□□□□ 0.5
VPS29-207ENST00000549970 FBXO18Q8NFZ0 1043 aa18.19■□□□□ 0.5
VPS29-207ENST00000549970 FOXP1Q9H334 677 aaPredicted RBP18.19■□□□□ 0.5
VPS29-207ENST00000549970 PCDHB2Q9Y5E7 798 aa18.19■□□□□ 0.5
VPS29-207ENST00000549970 ZNF623O75123 536 aa18.18■□□□□ 0.5
VPS29-207ENST00000549970 DGAT1O75907 488 aa18.18■□□□□ 0.5
VPS29-207ENST00000549970 ERLIN2O94905 339 aa18.18■□□□□ 0.5
VPS29-207ENST00000549970 HOXA11P31270 313 aaPredicted RBP18.18■□□□□ 0.5
VPS29-207ENST00000549970 TECP42680 631 aa18.18■□□□□ 0.5
VPS29-207ENST00000549970 ALDH7A1P49419 539 aaKnown RBP18.18■□□□□ 0.5
VPS29-207ENST00000549970 RARRES1P49788 294 aa18.18■□□□□ 0.5
VPS29-207ENST00000549970 MXD4Q14582 209 aaPredicted RBP18.18■□□□□ 0.5
VPS29-207ENST00000549970 DUSP6Q16828 381 aa18.18■□□□□ 0.5
VPS29-207ENST00000549970 NOMO2Q5JPE7 1267 aa18.18■□□□□ 0.5
VPS29-207ENST00000549970 TMC7Q7Z402 723 aa18.18■□□□□ 0.5
VPS29-207ENST00000549970 ASAP3Q8TDY4 903 aa18.18■□□□□ 0.5
VPS29-207ENST00000549970 PGBD4Q96DM1 585 aa18.18■□□□□ 0.5
VPS29-207ENST00000549970 CDCA3Q99618 268 aaPredicted RBP18.18■□□□□ 0.5
VPS29-207ENST00000549970 TBC1D13Q9NVG8 400 aa18.18■□□□□ 0.5
VPS29-207ENST00000549970 RAPGEFL1Q9UHV5 662 aa18.18■□□□□ 0.5
VPS29-207ENST00000549970 HIDE1A8MVS5 230 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 PI4K2BG5E9Z4 385 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 INO80B-WBP1J3KQ70 363 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 USO1O60763 962 aaKnown RBP18.17■□□□□ 0.5
VPS29-207ENST00000549970 OFD1O75665 1012 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 EYA4O95677 639 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 OR52Z1P0C646 297 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 CA8P35219 290 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 RBM25P49756 843 aaKnown RBP18.17■□□□□ 0.5
VPS29-207ENST00000549970 PTENP60484 403 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 RNASELQ05823 741 aaKnown RBP18.17■□□□□ 0.5
VPS29-207ENST00000549970 TFDP1Q14186 410 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 SMRP1Q8NCR6 262 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 VN1R2Q8NFZ6 395 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 RSPH1Q8WYR4 309 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 TMEM169Q96HH4 297 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 GBP3Q9H0R5 595 aa18.17■□□□□ 0.5
VPS29-207ENST00000549970 NGRNQ9NPE2 291 aaKnown RBP18.17■□□□□ 0.5
VPS29-207ENST00000549970 FAM86C2PA6NEL3 165 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 MED24O75448 989 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 SPATA31C1P0DKV0 1188 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 ARL2P36404 184 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 COASYQ13057 564 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 CAPSQ13938 189 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 TMEM31Q5JXX7 168 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 TTC38Q5R3I4 469 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 UBXN11Q5T124 520 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 LLGL2Q6P1M3 1020 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 AGMOQ6ZNB7 445 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 MAEAQ7L5Y9 396 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 TMEM173Q86WV6 379 aaPredicted RBP18.16■□□□□ 0.5
VPS29-207ENST00000549970 CATSPER3Q86XQ3 398 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms