RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 PRR20EP86478 221 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 PRR20CP86479 221 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 PRR20DP86480 221 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 PRR20BP86481 221 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 PRR20AP86496 221 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 BTG3Q14201 252 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-204ENST00000549064 SAMD5Q5TGI4 173 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 SYDE2Q5VT97 1194 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 MCTP2Q6DN12 878 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 SDE2Q6IQ49 451 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 DTHD1Q6ZMT9 781 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 NLRP8Q86W28 1048 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 ITPRIPQ8IWB1 547 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 KREMEN2Q8NCW0 462 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 DNERQ8NFT8 737 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 OR13H1Q8NG92 308 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 SPPL3Q8TCT6 385 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 TBC1D5Q92609 795 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 ATP6V0A1Q93050 837 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 OSBP2Q969R2 916 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 TAAR1Q96RJ0 339 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 MPHOSPH6Q99547 160 aaKnown RBP7.6□□□□□ -1.19
LIMA1-204ENST00000549064 LIN7BQ9HAP6 207 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 ZNF287Q9HBT7 754 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 ABCB6Q9NP58 842 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 COL20A1Q9P218 1284 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 CDH22Q9UJ99 828 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 EFR3BQ9Y2G0 817 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 RWDD3Q9Y3V2 267 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 MRPL42Q9Y6G3 142 aaKnown RBP7.6□□□□□ -1.19
LIMA1-204ENST00000549064 CEP250Q9BV73 2442 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 MYH6P13533 1939 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 ACACBO00763 2458 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 MAP1BP46821 2468 aaKnown RBP7.59□□□□□ -1.19
LIMA1-204ENST00000549064 BAHCC1Q9P281 2608 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 LOXHD1Q8IVV2 1947 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 TMEM238LA0A1B0GVL6 79 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 M0R2C6 588 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 GPAA1O43292 621 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 APPP05067 770 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 ATF7P17544 494 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-204ENST00000549064 NCLP19338 710 aaKnown RBP7.59□□□□□ -1.19
LIMA1-204ENST00000549064 EIF4A3P38919 411 aaKnown RBP7.59□□□□□ -1.19
LIMA1-204ENST00000549064 FAM160A1Q05DH4 1040 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 PWP1Q13610 501 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 CCINQ13939 588 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 ZKSCAN2Q63HK3 967 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 ZSCAN25Q6NSZ9 544 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 BTNL9Q6UXG8 535 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 CKAP2LQ8IYA6 745 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 KLHL23Q8NBE8 558 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 POF1BQ8WVV4 589 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 PPP2R3CQ969Q6 453 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 ZNF689Q96CS4 500 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-204ENST00000549064 KIF1BPQ96EK5 621 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 EAF1Q96JC9 268 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-204ENST00000549064 SEC16BQ96JE7 1060 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 TMEM74Q96NL1 305 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 TCF12Q99081 682 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 GSX2Q9BZM3 304 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 ZFATQ9P243 1243 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 ZNF292O60281 2723 aa7.59□□□□□ -1.19
LIMA1-204ENST00000549064 SPTBN2O15020 2390 aa7.59□□□□□ -1.2
LIMA1-204ENST00000549064 KAT6AQ92794 2004 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 C17orf102A2RUQ5 167 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 DCDC2BA2VCK2 349 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 PPFIA3O75145 1194 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 CELA3AP09093 270 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 SMIM10L2AP0DMW4 78 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 SMIM10L2BP0DMW5 78 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 RARAP10276 462 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 GHRP10912 638 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 PUM1Q14671 1186 aaKnown RBP eCLIP7.58□□□□□ -1.2
LIMA1-204ENST00000549064 HSDL1Q3SXM5 330 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 USH1GQ495M9 461 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 PAN2Q504Q3 1202 aaKnown RBP7.58□□□□□ -1.2
LIMA1-204ENST00000549064 HSP90AB4PQ58FF6 505 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 CWF19L1Q69YN2 538 aaKnown RBP7.58□□□□□ -1.2
LIMA1-204ENST00000549064 JAZF1Q86VZ6 243 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 IFNL3Q8IZI9 196 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 PPTC7Q8NI37 304 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 KCNG4Q8TDN1 519 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 ATP8B4Q8TF62 1192 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 DCAF4Q8WV16 495 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 APBB2Q92870 758 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 P2RX5Q93086 422 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 C16orf70Q9BSU1 422 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 PLVAPQ9BX97 442 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 RNPEPQ9H4A4 650 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 TLE6Q9H808 572 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 PLA2G2EQ9NZK7 142 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 RALYQ9UKM9 306 aaKnown RBP7.58□□□□□ -1.2
LIMA1-204ENST00000549064 PPM1HQ9ULR3 514 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 SORCS3Q9UPU3 1222 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 TLR6Q9Y2C9 796 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 DYRK1BQ9Y463 629 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 SUPT16HQ9Y5B9 1047 aaKnown RBP7.58□□□□□ -1.2
LIMA1-204ENST00000549064 MRVI1Q9Y6F6 885 aa7.58□□□□□ -1.2
LIMA1-204ENST00000549064 TSPY2A6NKD2 308 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 B4DLN1 442 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms