RNA–Protein interactions for RNA: ENST00000548786.1

DDX54-205, Transcript of DEAD-box helicase 54, humanhuman

TSL 2

Gene DDX54, Length 498 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-205ENST00000548786 POU3F3P20264 500 aaPredicted RBP17.5■□□□□ 0.39
DDX54-205ENST00000548786 PBX3P40426 434 aa17.5■□□□□ 0.39
DDX54-205ENST00000548786 PTENP60484 403 aa17.5■□□□□ 0.39
DDX54-205ENST00000548786 MBTD1Q05BQ5 628 aa17.5■□□□□ 0.39
DDX54-205ENST00000548786 CLLU1OSQ5K130 101 aa17.5■□□□□ 0.39
DDX54-205ENST00000548786 KCNK18Q7Z418 384 aa17.5■□□□□ 0.39
DDX54-205ENST00000548786 MCPH1Q8NEM0 835 aa17.5■□□□□ 0.39
DDX54-205ENST00000548786 BSNDQ8WZ55 320 aa17.5■□□□□ 0.39
DDX54-205ENST00000548786 CASD1Q96PB1 797 aa17.5■□□□□ 0.39
DDX54-205ENST00000548786 C11orf84Q9BUA3 381 aaPredicted RBP17.5■□□□□ 0.39
DDX54-205ENST00000548786 TYW1Q9NV66 732 aaKnown RBP17.5■□□□□ 0.39
DDX54-205ENST00000548786 MTMR6Q9Y217 621 aa17.5■□□□□ 0.39
DDX54-205ENST00000548786 INPP5FQ9Y2H2 1132 aa17.5■□□□□ 0.39
DDX54-205ENST00000548786 RWDD3Q9Y3V2 267 aa17.5■□□□□ 0.39
DDX54-205ENST00000548786 CLIC4Q9Y696 253 aa17.5■□□□□ 0.39
DDX54-205ENST00000548786 XIRP2A4UGR9 3374 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 B4GALT5O43286 388 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 TSPAN1O60635 241 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 CYP11B2P19099 503 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 TFF2Q03403 129 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 GRIN1Q05586 938 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 PTPROQ16827 1216 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 ZNF598Q86UK7 904 aaKnown RBP17.49■□□□□ 0.39
DDX54-205ENST00000548786 CDR2LQ86X02 465 aaPredicted RBP17.49■□□□□ 0.39
DDX54-205ENST00000548786 KLHL23Q8NBE8 558 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 MRPL38Q96DV4 380 aaKnown RBP17.49■□□□□ 0.39
DDX54-205ENST00000548786 CDK5RAP3Q96JB5 506 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 KIFC3Q9BVG8 833 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 TMEM117Q9H0C3 514 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 FAM105AQ9NUU6 356 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 DNM3Q9UQ16 869 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 STK24Q9Y6E0 443 aa17.49■□□□□ 0.39
DDX54-205ENST00000548786 C5orf67F2Z3F1 127 aa17.48■□□□□ 0.39
DDX54-205ENST00000548786 HOXA2O43364 376 aa17.48■□□□□ 0.39
DDX54-205ENST00000548786 STX6O43752 255 aa17.48■□□□□ 0.39
DDX54-205ENST00000548786 ITGB1P05556 798 aa17.48■□□□□ 0.39
DDX54-205ENST00000548786 MUTP22033 750 aa17.48■□□□□ 0.39
DDX54-205ENST00000548786 HOXA11P31270 313 aaPredicted RBP17.48■□□□□ 0.39
DDX54-205ENST00000548786 RAD51AP2Q09MP3 1159 aa17.48■□□□□ 0.39
DDX54-205ENST00000548786 LRRC55Q6ZSA7 311 aa17.48■□□□□ 0.39
DDX54-205ENST00000548786 FAM43BQ6ZT52 329 aaPredicted RBP17.48■□□□□ 0.39
DDX54-205ENST00000548786 PNMA5Q96PV4 448 aa17.48■□□□□ 0.39
DDX54-205ENST00000548786 RUSC1Q9BVN2 902 aa17.48■□□□□ 0.39
DDX54-205ENST00000548786 EIF2AQ9BY44 585 aaKnown RBP17.48■□□□□ 0.39
DDX54-205ENST00000548786 THEGQ9P2T0 379 aa17.48■□□□□ 0.39
DDX54-205ENST00000548786 USP20Q9Y2K6 914 aa17.48■□□□□ 0.39
DDX54-205ENST00000548786 PCDHB2Q9Y5E7 798 aa17.48■□□□□ 0.39
DDX54-205ENST00000548786 EYA4O95677 639 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 EOMESO95936 686 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 RB1P06400 928 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 DNAJB1P25685 340 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 MARCKSP29966 332 aaPredicted RBP17.47■□□□□ 0.39
DDX54-205ENST00000548786 UBXN11Q5T124 520 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 ARL6IP4Q66PJ3 421 aaKnown RBP17.47■□□□□ 0.39
DDX54-205ENST00000548786 CABP7Q86V35 215 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 THNSL1Q8IYQ7 743 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 LRRC43Q8N309 656 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 COLGALT1Q8NBJ5 622 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 APOL6Q9BWW8 343 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 CWH43Q9H720 699 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 LMCD1Q9NZU5 365 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 PLAGL2Q9UPG8 496 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 PCDHB12Q9Y5F1 795 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 PCDHGC5Q9Y5F6 944 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 ATG2AQ2TAZ0 1938 aa17.47■□□□□ 0.39
DDX54-205ENST00000548786 MYO7AQ13402 2215 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 RAB27AP51159 221 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 AMHR2Q16671 573 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 TMEM132AQ24JP5 1023 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 FOXD4L6Q3SYB3 417 aaPredicted RBP17.46■□□□□ 0.39
DDX54-205ENST00000548786 TCEAL5Q5H9L2 206 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 SPECC1Q5M775 1068 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 NOTUMQ6P988 496 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 FOXD4L3Q6VB84 417 aaPredicted RBP17.46■□□□□ 0.39
DDX54-205ENST00000548786 EP400NLQ6ZTU2 488 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 ZBTB8OSQ8IWT0 167 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 RASSF8Q8NHQ8 419 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 DEPTORQ8TB45 409 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 PLVAPQ9BX97 442 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 GBP3Q9H0R5 595 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 AAASQ9NRG9 546 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 HES2Q9Y543 173 aa17.46■□□□□ 0.39
DDX54-205ENST00000548786 SPTBN5Q9NRC6 3674 aaKnown RBP17.46■□□□□ 0.39
DDX54-205ENST00000548786 PLXNA4Q9HCM2 1894 aa17.46■□□□□ 0.38
DDX54-205ENST00000548786 TTLL13PA6NNM8 815 aa17.45■□□□□ 0.38
DDX54-205ENST00000548786 HIP1RO75146 1068 aa17.45■□□□□ 0.38
DDX54-205ENST00000548786 BMP15O95972 392 aa17.45■□□□□ 0.38
DDX54-205ENST00000548786 SKIP12755 728 aa17.45■□□□□ 0.38
DDX54-205ENST00000548786 ARF4P18085 180 aaPredicted RBP17.45■□□□□ 0.38
DDX54-205ENST00000548786 UBA7P41226 1012 aa17.45■□□□□ 0.38
DDX54-205ENST00000548786 NCBP1Q09161 790 aaKnown RBP17.45■□□□□ 0.38
DDX54-205ENST00000548786 DHX8Q14562 1220 aaKnown RBP17.45■□□□□ 0.38
DDX54-205ENST00000548786 TIGD5Q53EQ6 642 aa17.45■□□□□ 0.38
DDX54-205ENST00000548786 GLB1LQ6UWU2 654 aa17.45■□□□□ 0.38
DDX54-205ENST00000548786 IFNLR1Q8IU57 520 aaPredicted RBP17.45■□□□□ 0.38
DDX54-205ENST00000548786 IFT74Q96LB3 600 aa17.45■□□□□ 0.38
DDX54-205ENST00000548786 TRAIPQ9BWF2 469 aa17.45■□□□□ 0.38
DDX54-205ENST00000548786 VCANP13611 3396 aa17.45■□□□□ 0.38
DDX54-205ENST00000548786 NPHP3-ACAD11A0A0J9YXS1 232 aa17.44■□□□□ 0.38
DDX54-205ENST00000548786 CCDC169A6NNP5 214 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms