RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 RTP1P59025 263 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 KCNH2Q12809 1159 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 GRB14Q14449 540 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 LONRF2Q1L5Z9 754 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 TSR1Q2NL82 804 aaKnown RBP15.64■□□□□ 0.09
VPS33A-209ENST00000544349 RGMBQ6NW40 437 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 ZNF771Q7L3S4 317 aaPredicted RBP15.64■□□□□ 0.09
VPS33A-209ENST00000544349 KIAA1328Q86T90 577 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 SLC9A9Q8IVB4 645 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 DHX37Q8IY37 1157 aaKnown RBP15.64■□□□□ 0.09
VPS33A-209ENST00000544349 SCFD2Q8WU76 684 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 SPIRE2Q8WWL2 714 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 BSNDQ8WZ55 320 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 MKNK1Q9BUB5 465 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 MMRN2Q9H8L6 949 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 NRBP2Q9NSY0 501 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 DIS3Q9Y2L1 958 aaKnown RBP15.64■□□□□ 0.09
VPS33A-209ENST00000544349 CTAGE15A4D2H0 777 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 CCDC151A5D8V7 595 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 CCDC169A6NNP5 214 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 EIF3CLB5ME19 914 aaKnown RBP15.63■□□□□ 0.09
VPS33A-209ENST00000544349 IGF2BP3O00425 579 aaKnown RBP eCLIP15.63■□□□□ 0.09
VPS33A-209ENST00000544349 SRGAP2O75044 1071 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 LGR5O75473 907 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 CTAGE8P0CG41 777 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 MAPK4P31152 587 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 POLGP54098 1239 aaPredicted RBP15.63■□□□□ 0.09
VPS33A-209ENST00000544349 MYBPC2Q14324 1141 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 TMEM63BQ5T3F8 832 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 PLEKHH3Q7Z736 793 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 CTAGE6Q86UF2 777 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 CTAGE4Q8IX94 777 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 TMEM161BQ8NDZ6 487 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 COPS5Q92905 334 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 BORCS6Q96GS4 357 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 CEP89Q96ST8 783 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 EIF3CQ99613 913 aaKnown RBP15.63■□□□□ 0.09
VPS33A-209ENST00000544349 DHX33Q9H6R0 707 aaKnown RBP15.63■□□□□ 0.09
VPS33A-209ENST00000544349 KMT5AQ9NQR1 393 aa15.63■□□□□ 0.09
VPS33A-209ENST00000544349 NOP56O00567 594 aaKnown RBP15.62■□□□□ 0.09
VPS33A-209ENST00000544349 XRCC5P13010 732 aaKnown RBP15.62■□□□□ 0.09
VPS33A-209ENST00000544349 CYLC1P35663 651 aaPredicted RBP15.62■□□□□ 0.09
VPS33A-209ENST00000544349 VSNL1P62760 191 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 TUBB2AQ13885 445 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 EMC2Q15006 297 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 TAPT1Q6NXT6 567 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 DPP9Q86TI2 863 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 TMEM174Q8WUU8 243 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 HVCN1Q96D96 273 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 SPATA33Q96N06 139 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 TUBB2BQ9BVA1 445 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 AZI2Q9H6S1 392 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 SUGCTQ9HAC7 445 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 ZCCHC17Q9NP64 241 aaKnown RBP15.62■□□□□ 0.09
VPS33A-209ENST00000544349 VTA1Q9NP79 307 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 ARHGAP20Q9P2F6 1191 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 RAB21Q9UL25 225 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 ADGRA2Q96PE1 1338 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 PASKQ96RG2 1323 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 SNRPFP62306 86 aaKnown RBP15.62■□□□□ 0.09
VPS33A-209ENST00000544349 BRD3Q15059 726 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 TARBP2Q15633 366 aaKnown RBP15.62■□□□□ 0.09
VPS33A-209ENST00000544349 MAMDC4Q6UXC1 1216 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 FAM186BQ8IYM0 893 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 ZBTB9Q96C00 473 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 KIFC3Q9BVG8 833 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 POLR3FQ9H1D9 316 aaPredicted RBP15.62■□□□□ 0.09
VPS33A-209ENST00000544349 RNF216Q9NWF9 866 aaPredicted RBP15.62■□□□□ 0.09
VPS33A-209ENST00000544349 ZNHIT6Q9NWK9 470 aaKnown RBP15.62■□□□□ 0.09
VPS33A-209ENST00000544349 CPA4Q9UI42 421 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 TBX20Q9UMR3 447 aa15.62■□□□□ 0.09
VPS33A-209ENST00000544349 POLR3GO15318 223 aaPredicted RBP15.61■□□□□ 0.09
VPS33A-209ENST00000544349 ATP8B1O43520 1251 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 AFPP02771 609 aaKnown RBP15.61■□□□□ 0.09
VPS33A-209ENST00000544349 OAS2P29728 719 aaKnown RBP15.61■□□□□ 0.09
VPS33A-209ENST00000544349 CYP2J2P51589 502 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 KRT83P78385 493 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 ZNF662Q6ZS27 426 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 PLPPR4Q7Z2D5 763 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 C12orf56Q8IXR9 622 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.61■□□□□ 0.09
VPS33A-209ENST00000544349 FRMD4BQ9Y2L6 1034 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 RBM47A0AV96 593 aaKnown RBP15.61■□□□□ 0.09
VPS33A-209ENST00000544349 MACROD2A1Z1Q3 448 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 DENND3A2RUS2 1198 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 LRRC53A6NM62 1247 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 H3BQF6 201 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 SNAI1O95863 264 aaPredicted RBP15.61■□□□□ 0.09
VPS33A-209ENST00000544349 SLC10A3P09131 477 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 DCAF17Q5H9S7 520 aaPredicted RBP15.61■□□□□ 0.09
VPS33A-209ENST00000544349 BEND6Q5SZJ8 279 aaPredicted RBP15.61■□□□□ 0.09
VPS33A-209ENST00000544349 EMSYQ7Z589 1322 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 MAP4K3Q8IVH8 894 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 CCDC170Q8IYT3 715 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 NEK11Q8NG66 645 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 BAP1Q92560 729 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 GLG1Q92896 1179 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 SLC35C1Q96A29 364 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 MAML3Q96JK9 1138 aa15.61■□□□□ 0.09
VPS33A-209ENST00000544349 FAM167AQ96KS9 214 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms