RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 ZNF623O75123 536 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 HOXB8P17481 243 aaPredicted RBP14.65□□□□□ -0.06
RTN3-213ENST00000543552 NEK4P51957 841 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 NPEPPSP55786 919 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 BCAR1P56945 870 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 RNASELQ05823 741 aaKnown RBP14.65□□□□□ -0.06
RTN3-213ENST00000543552 NCBP1Q09161 790 aaKnown RBP14.65□□□□□ -0.06
RTN3-213ENST00000543552 NR5A1Q13285 461 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 MXD4Q14582 209 aaPredicted RBP14.65□□□□□ -0.06
RTN3-213ENST00000543552 EMC2Q15006 297 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 PCBP1Q15365 356 aaKnown RBP eCLIP14.65□□□□□ -0.061e-11■■■□□ 14.6
RTN3-213ENST00000543552 SAFBQ15424 915 aaKnown RBP eCLIP14.65□□□□□ -0.06
RTN3-213ENST00000543552 CALCRLQ16602 461 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 ME3Q16798 604 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 XKR9Q5GH70 373 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 TMEM184AQ6ZMB5 413 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 KSR1Q8IVT5 923 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 NECAB1Q8N987 351 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 TMEM87AQ8NBN3 555 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 URGCPQ8TCY9 931 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 PRPF31Q8WWY3 499 aaKnown RBP14.65□□□□□ -0.06
RTN3-213ENST00000543552 PCDHA12Q9UN75 941 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 CNTNAP2Q9UHC6 1331 aa14.65□□□□□ -0.06
RTN3-213ENST00000543552 TRIOO75962 3097 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 ZC3H11AO75152 810 aaKnown RBP eCLIP14.64□□□□□ -0.072e-7■■■■■ 30.4
RTN3-213ENST00000543552 ERLIN2O94905 339 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 SRGAP2CP0DJJ0 459 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 FDPSP14324 419 aaKnown RBP14.64□□□□□ -0.07
RTN3-213ENST00000543552 PBX3P40426 434 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 CYP4A11Q02928 519 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 SPIRE1Q08AE8 756 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 LAMTOR4Q0VGL1 99 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 GIT2Q14161 759 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 TFDP1Q14186 410 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 TPRNQ4KMQ1 711 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 HERC4Q5GLZ8 1057 aaPredicted RBP14.64□□□□□ -0.07
RTN3-213ENST00000543552 NOMO2Q5JPE7 1267 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 RNF135Q8IUD6 432 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 TPH2Q8IWU9 490 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 DIS3L2Q8IYB7 885 aaKnown RBP14.64□□□□□ -0.07
RTN3-213ENST00000543552 NSUN7Q8NE18 718 aaKnown RBP14.64□□□□□ -0.07
RTN3-213ENST00000543552 CASP10Q92851 521 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 TNFRSF25Q93038 417 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 TMEM143Q96AN5 459 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 DYDC2Q96IM9 177 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 MTRQ99707 1265 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 PHF7Q9BWX1 381 aaPredicted RBP14.64□□□□□ -0.07
RTN3-213ENST00000543552 IFT122Q9HBG6 1241 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 RGL1Q9NZL6 768 aa14.64□□□□□ -0.07
RTN3-213ENST00000543552 HIDE1A8MVS5 230 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 LYPLA2O95372 231 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 CA8P35219 290 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 TECP42680 631 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 EARS2Q5JPH6 523 aaKnown RBP14.63□□□□□ -0.07
RTN3-213ENST00000543552 ANKRD54Q6NXT1 300 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 FERMT3Q86UX7 667 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 MRPL43Q8N983 215 aaKnown RBP14.63□□□□□ -0.07
RTN3-213ENST00000543552 RNF149Q8NC42 400 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 CNNM3Q8NE01 707 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 CCDC51Q96ER9 411 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 EIF2AK1Q9BQI3 630 aaKnown RBP14.63□□□□□ -0.07
RTN3-213ENST00000543552 UBN1Q9NPG3 1134 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 ANKEF1Q9NU02 776 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 KANSL3Q9P2N6 904 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 WRAP73Q9P2S5 460 aaPredicted RBP14.63□□□□□ -0.07
RTN3-213ENST00000543552 MUTYHQ9UIF7 546 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 INPP5FQ9Y2H2 1132 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 PCDHB2Q9Y5E7 798 aa14.63□□□□□ -0.07
RTN3-213ENST00000543552 LOC730098B7Z3J9 87 aa14.62□□□□□ -0.07
RTN3-213ENST00000543552 DGAT1O75907 488 aa14.62□□□□□ -0.07
RTN3-213ENST00000543552 LARGE1O95461 756 aa14.62□□□□□ -0.07
RTN3-213ENST00000543552 AXLP30530 894 aa14.62□□□□□ -0.07
RTN3-213ENST00000543552 CTTNQ14247 550 aaKnown RBP14.62□□□□□ -0.07
RTN3-213ENST00000543552 CBX2Q14781 532 aaPredicted RBP14.62□□□□□ -0.07
RTN3-213ENST00000543552 CES5AQ6NT32 575 aa14.62□□□□□ -0.07
RTN3-213ENST00000543552 LLGL2Q6P1M3 1020 aa14.62□□□□□ -0.07
RTN3-213ENST00000543552 ZNF579Q8NAF0 562 aaKnown RBP14.62□□□□□ -0.07
RTN3-213ENST00000543552 VN1R2Q8NFZ6 395 aa14.62□□□□□ -0.07
RTN3-213ENST00000543552 SUSD6Q92537 303 aa14.62□□□□□ -0.07
RTN3-213ENST00000543552 LPPQ93052 612 aa14.62□□□□□ -0.07
RTN3-213ENST00000543552 TTC12Q9H892 705 aaPredicted RBP14.62□□□□□ -0.07
RTN3-213ENST00000543552 BMP2KQ9NSY1 1161 aaPredicted RBP14.62□□□□□ -0.07
RTN3-213ENST00000543552 TBC1D13Q9NVG8 400 aa14.62□□□□□ -0.07
RTN3-213ENST00000543552 DZANK1Q9NVP4 752 aa14.62□□□□□ -0.07
RTN3-213ENST00000543552 ARID2Q68CP9 1835 aa14.62□□□□□ -0.07
RTN3-213ENST00000543552 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.61□□□□□ -0.07
RTN3-213ENST00000543552 FAM205CA6NFA0 338 aa14.61□□□□□ -0.07
RTN3-213ENST00000543552 C2orf71A6NGG8 1288 aa14.61□□□□□ -0.07
RTN3-213ENST00000543552 BTBD18B2RXH4 712 aa14.61□□□□□ -0.07
RTN3-213ENST00000543552 SLITRK3O94933 977 aa14.61□□□□□ -0.07
RTN3-213ENST00000543552 POU5F1BQ06416 359 aa14.61□□□□□ -0.07
RTN3-213ENST00000543552 KCNC3Q14003 757 aa14.61□□□□□ -0.07
RTN3-213ENST00000543552 NOTUMQ6P988 496 aa14.61□□□□□ -0.07
RTN3-213ENST00000543552 MRPL10Q7Z7H8 261 aaKnown RBP14.61□□□□□ -0.07
RTN3-213ENST00000543552 DDX53Q86TM3 631 aaKnown RBP14.61□□□□□ -0.07
RTN3-213ENST00000543552 HACE1Q8IYU2 909 aa14.61□□□□□ -0.07
RTN3-213ENST00000543552 VPS52Q8N1B4 723 aa14.61□□□□□ -0.07
RTN3-213ENST00000543552 IGSF21Q96ID5 467 aa14.61□□□□□ -0.07
RTN3-213ENST00000543552 MFSD14AQ96MC6 490 aa14.61□□□□□ -0.07
RTN3-213ENST00000543552 NECTIN4Q96NY8 510 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms