RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 CHURC1Q8WUH1 139 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 NELFBQ8WX92 580 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 NLRP7Q8WX94 980 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 JAKMIP2Q96AA8 810 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 CALML4Q96GE6 196 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 SH3GL2Q99962 352 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 ZNF112Q9UJU3 913 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 FAM184BQ9ULE4 1060 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 TMCC3Q9ULS5 477 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 GJA3Q9Y6H8 435 aa8.65□□□□□ -1.02
PDLIM5-221ENST00000542407 IGLV3-22A0A075B6J6 115 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 TMEM110-MUSTN1A8MSY1 372 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 E7EVH7 732 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 GYPCP04921 128 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 LSP1P33241 339 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 NNTQ13423 1086 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 CAMK2BQ13554 666 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 DGKZQ13574 1117 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 CCDC122Q5T0U0 273 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 NBPF12Q5TAG4 269 aaPredicted RBP8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 CYB5D1Q6P9G0 228 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 NEK10Q6ZWH5 1172 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 TRAPPC11Q7Z392 1133 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 TMTC1Q8IUR5 882 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 SLC7A5P1Q8MH63 180 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 TRPM4Q8TD43 1214 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 SNX29Q8TEQ0 813 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 RNPC3Q96LT9 517 aaKnown RBP8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 SH3GL1Q99961 368 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 KIAA1683Q9H0B3 1180 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 CRISPLD2Q9H0B8 497 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 PPANQ9NQ55 473 aaKnown RBP8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 ADD3Q9UEY8 706 aaKnown RBP8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 TBX3O15119 743 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 RASSF9O75901 435 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 ZCCHC8Q6NZY4 707 aaKnown RBP8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 CCDC174Q6PII3 467 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 SPATS2Q86XZ4 545 aaKnown RBP8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 IRF2BP1Q8IU81 584 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 SMYD1Q8NB12 490 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 OR8K1Q8NGG5 319 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 LARP4BQ92615 738 aaKnown RBP8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 RBM41Q96IZ5 413 aaKnown RBP8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 CHP1Q99653 195 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 RAB34Q9BZG1 259 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 VPS16Q9H269 839 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 LIMA1Q9UHB6 759 aaKnown RBP8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 IP6K2Q9UHH9 426 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 PCDHA12Q9UN75 941 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 RLFQ13129 1914 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 TRIM49BA6NDI0 452 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 N4BP3O15049 544 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 SLC26A4O43511 780 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 CDC25CP30307 473 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 KRT9P35527 623 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 CKAP4Q07065 602 aaKnown RBP8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 STK4Q13043 487 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 MFSD10Q14728 455 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 GNPTABQ3T906 1256 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 KRT79Q5XKE5 535 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 CYP26C1Q6V0L0 522 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 TSEN2Q8NCE0 465 aaKnown RBP8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 KIAA0895Q8NCT3 520 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 CCT8L2Q96SF2 557 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 MAK16Q9BXY0 300 aaKnown RBP8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 MYO1AQ9UBC5 1043 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 VAV3Q9UKW4 847 aa8.64□□□□□ -1.03
PDLIM5-221ENST00000542407 TARSL2A2RTX5 802 aaKnown RBP8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 RNF225M0QZC1 329 aaPredicted RBP8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 PDE2AO00408 941 aaPredicted RBP8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 WDR46O15213 610 aaKnown RBP8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 MSH4O15457 936 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 AHCYL1O43865 530 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 CEP104O60308 925 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 FCER1AP12319 257 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 HPDP32754 393 aaPredicted RBP8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 STAT3P40763 770 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 GHRHRQ02643 423 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 WASHC5Q12768 1159 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 SF3A3Q12874 501 aaKnown RBP eCLIP8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 LONRF1Q17RB8 773 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 PRR16Q569H4 304 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 CWF19L1Q69YN2 538 aaKnown RBP8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 TTI2Q6NXR4 508 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 SV2BQ7L1I2 683 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 LDHDQ86WU2 507 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 SLFN12Q8IYM2 578 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 CYP2W1Q8TAV3 490 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 LPAR1Q92633 364 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 UIMC1Q96RL1 719 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 PSMB7Q99436 277 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 WDR18Q9BV38 432 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 EPN3Q9H201 632 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 GPRC5DQ9NZD1 345 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 C6orf203Q9P0P8 240 aaPredicted RBP8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 BAIAP2L1Q9UHR4 511 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 ABCB11O95342 1321 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 MED24O75448 989 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 MTA2O94776 668 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 ICAM1P05362 532 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms