RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 ATP6V0A4Q9HBG4 840 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 DNAJC12Q9UKB3 198 aa15.83■□□□□ 0.12
CLIP1-216ENST00000541410 IGSF9BQ9UPX0 1349 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 SPDYE4A6NLX3 237 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 RRP9O43818 475 aaKnown RBP15.82■□□□□ 0.12
CLIP1-216ENST00000541410 DGAT1O75907 488 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 ZSCAN20P17040 1043 aaPredicted RBP15.82■□□□□ 0.12
CLIP1-216ENST00000541410 ICAM3P32942 547 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 EMC2Q15006 297 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 XKR3Q5GH77 459 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 SLC39A4Q6P5W5 647 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 SRGAP1Q7Z6B7 1085 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 INTS2Q9H0H0 1204 aaKnown RBP15.82■□□□□ 0.12
CLIP1-216ENST00000541410 PDCL3Q9H2J4 239 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 PDLIM7Q9NR12 457 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 RNF216Q9NWF9 866 aaPredicted RBP15.82■□□□□ 0.12
CLIP1-216ENST00000541410 CGNQ9P2M7 1197 aaKnown RBP15.82■□□□□ 0.12
CLIP1-216ENST00000541410 NCK2O43639 380 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 DNA2P51530 1060 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 ALCAMQ13740 583 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 DRAP1Q14919 205 aaPredicted RBP15.82■□□□□ 0.12
CLIP1-216ENST00000541410 SLC18A3Q16572 532 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 C1orf220Q5T0J3 134 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 PHLDB3Q6NSJ2 640 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 ZNF662Q6ZS27 426 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 KIFAP3Q92845 792 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 COPS5Q92905 334 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 BICD1Q96G01 975 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 MMP19Q99542 508 aa15.82■□□□□ 0.12
CLIP1-216ENST00000541410 MAFBQ9Y5Q3 323 aaPredicted RBP15.82■□□□□ 0.12
CLIP1-216ENST00000541410 HNRNPDLO14979 420 aaKnown RBP15.81■□□□□ 0.12
CLIP1-216ENST00000541410 OATP04181 439 aa15.81■□□□□ 0.12
CLIP1-216ENST00000541410 EDNRBP24530 442 aa15.81■□□□□ 0.12
CLIP1-216ENST00000541410 KLRC1P26715 233 aa15.81■□□□□ 0.12
CLIP1-216ENST00000541410 TCF7P36402 384 aaPredicted RBP15.81■□□□□ 0.12
CLIP1-216ENST00000541410 JAM2P57087 298 aa15.81■□□□□ 0.12
CLIP1-216ENST00000541410 KCTD2Q14681 263 aa15.81■□□□□ 0.12
CLIP1-216ENST00000541410 KIAA0753Q2KHM9 967 aa15.81■□□□□ 0.12
CLIP1-216ENST00000541410 RSRC2Q7L4I2 434 aaKnown RBP15.81■□□□□ 0.12
CLIP1-216ENST00000541410 TAS1R3Q7RTX0 852 aa15.81■□□□□ 0.12
CLIP1-216ENST00000541410 TRAPPC11Q7Z392 1133 aa15.81■□□□□ 0.12
CLIP1-216ENST00000541410 POMGNT1Q8WZA1 660 aa15.81■□□□□ 0.12
CLIP1-216ENST00000541410 TIPINQ9BVW5 301 aa15.81■□□□□ 0.12
CLIP1-216ENST00000541410 TSGA10Q9BZW7 698 aa15.81■□□□□ 0.12
CLIP1-216ENST00000541410 TOPORSQ9NS56 1045 aaPredicted RBP15.81■□□□□ 0.12
CLIP1-216ENST00000541410 GTPBP10A4D1E9 387 aaKnown RBP15.8■□□□□ 0.12
CLIP1-216ENST00000541410 SOCS7O14512 581 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 OSBPP22059 807 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 CXCR5P32302 372 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 MAP2K1Q02750 393 aaPredicted RBP15.8■□□□□ 0.12
CLIP1-216ENST00000541410 DRP2Q13474 957 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 PPP2R5AQ15172 486 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 SNRNP35Q16560 246 aaKnown RBP15.8■□□□□ 0.12
CLIP1-216ENST00000541410 PTPROQ16827 1216 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 HSDL1Q3SXM5 330 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 INTS8Q75QN2 995 aaKnown RBP15.8■□□□□ 0.12
CLIP1-216ENST00000541410 MAP4K3Q8IVH8 894 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 EHBP1Q8NDI1 1231 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 ST6GALNAC4Q9H4F1 302 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 PDGFCQ9NRA1 345 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 SAR1BQ9Y6B6 198 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 LRRIQ4A6NIV6 560 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 EVI5O60447 810 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 DKC1O60832 514 aaKnown RBP eCLIP15.8■□□□□ 0.12
CLIP1-216ENST00000541410 ATG7O95352 703 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 CLCN6P51797 869 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 FASTKD5Q7L8L6 764 aaKnown RBP15.8■□□□□ 0.12
CLIP1-216ENST00000541410 MCPH1Q8NEM0 835 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 ASAP3Q8TDY4 903 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 GOLGA1Q92805 767 aa15.8■□□□□ 0.12
CLIP1-216ENST00000541410 TMCO5BA8MYB1 307 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 F8VZ95 297 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 RBAK-RBAKDNI3L0D1 243 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 TACC1O75410 805 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 RHOXF2BP0C7M4 288 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 STAT5BP51692 787 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 ERVK-9P63128 1117 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 SNAPC2Q13487 334 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 GJC2Q5T442 439 aaPredicted RBP15.79■□□□□ 0.12
CLIP1-216ENST00000541410 LDLRAD1Q5T700 205 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 ARHGEF19Q8IW93 802 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 NOA1Q8NC60 698 aaKnown RBP15.79■□□□□ 0.12
CLIP1-216ENST00000541410 LMO3Q8TAP4 145 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 KAT5Q92993 513 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 ZBTB10Q96DT7 871 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 ZNF668Q96K58 619 aaPredicted RBP15.79■□□□□ 0.12
CLIP1-216ENST00000541410 IFT74Q96LB3 600 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 MMS19Q96T76 1030 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 RHOXF2Q9BQY4 288 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 SLC25A27O95847 323 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 DLATP10515 647 aaKnown RBP15.79■□□□□ 0.12
CLIP1-216ENST00000541410 CEP112Q8N8E3 955 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 GLG1Q92896 1179 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 NTPCRQ9BSD7 190 aaKnown RBP15.79■□□□□ 0.12
CLIP1-216ENST00000541410 GPR88Q9GZN0 384 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 TMEM117Q9H0C3 514 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 GOLPH3Q9H4A6 298 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 UBE2TQ9NPD8 197 aaPredicted RBP15.79■□□□□ 0.12
CLIP1-216ENST00000541410 ZNF446Q9NWS9 450 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 SMARCAL1Q9NZC9 954 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms