RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 FZD8Q9H461 694 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 TMEM134Q9H6X4 195 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 MINDY3Q9H8M7 445 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 SUCLA2Q9P2R7 463 aaPredicted RBP11.64□□□□□ -0.55
VPS33A-204ENST00000540669 PRKAG2Q9UGJ0 569 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 PDCD11Q14690 1871 aaKnown RBP11.63□□□□□ -0.55
VPS33A-204ENST00000540669 VTNP04004 478 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 KRT18P05783 430 aaKnown RBP11.63□□□□□ -0.55
VPS33A-204ENST00000540669 IQCF3P0C7M6 154 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 MYBP10242 640 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 IDEP14735 1019 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 TMOD1P28289 359 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 NMT1P30419 496 aaKnown RBP11.63□□□□□ -0.55
VPS33A-204ENST00000540669 ABCD1P33897 745 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 PEX3P56589 373 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 MCCD1P59942 119 aaPredicted RBP11.63□□□□□ -0.55
VPS33A-204ENST00000540669 MRPS6P82932 125 aaKnown RBP11.63□□□□□ -0.55
VPS33A-204ENST00000540669 CDC42EP1Q00587 391 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 STX1AQ16623 288 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 NFIL3Q16649 462 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 LRRC26Q2I0M4 334 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 HERC4Q5GLZ8 1057 aaPredicted RBP11.63□□□□□ -0.55
VPS33A-204ENST00000540669 L1TD1Q5T7N2 865 aaKnown RBP11.63□□□□□ -0.55
VPS33A-204ENST00000540669 CENPPQ6IPU0 288 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 SLC39A4Q6P5W5 647 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 LRSAM1Q6UWE0 723 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 C11orf57Q6ZUT1 292 aaPredicted RBP11.63□□□□□ -0.55
VPS33A-204ENST00000540669 HAUS6Q7Z4H7 955 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 KSR1Q8IVT5 923 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 FAM178BQ8IXR5 827 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 C12orf56Q8IXR9 622 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 SMYD4Q8IYR2 804 aaPredicted RBP11.63□□□□□ -0.55
VPS33A-204ENST00000540669 MLKLQ8NB16 471 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 CAGE1Q8TC20 777 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 TMEM40Q8WWA1 233 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 VWCEQ96DN2 955 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 MAP7D2Q96T17 732 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 BPIFA3Q9BQP9 254 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 KIFC3Q9BVG8 833 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 NOC4LQ9BVI4 516 aaKnown RBP11.63□□□□□ -0.55
VPS33A-204ENST00000540669 POLD4Q9HCU8 107 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 KCNG1Q9UIX4 513 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 SQORQ9Y6N5 450 aa11.63□□□□□ -0.55
VPS33A-204ENST00000540669 CNTNAP2Q9UHC6 1331 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 COL4A6Q14031 1691 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 MICAL3Q7RTP6 2002 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 H0YCG3 227 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 TGFB1I1O43294 461 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 CHRNA1P02708 482 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 DARSP14868 501 aaKnown RBP11.62□□□□□ -0.55
VPS33A-204ENST00000540669 PROZP22891 400 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 PPP1R2P41236 205 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 PRCPP42785 496 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 DNM2P50570 870 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 EFNA5P52803 228 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 KCNA1Q09470 495 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 FAAP100Q0VG06 881 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 GPNMBQ14956 572 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 PCBP1Q15365 356 aaKnown RBP eCLIP11.62□□□□□ -0.55
VPS33A-204ENST00000540669 TRIM60Q495X7 471 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 TTI2Q6NXR4 508 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 MAEAQ7L5Y9 396 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 MYCT1Q8N699 235 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 DNAJB3Q8WWF6 145 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 VTI1AQ96AJ9 217 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 PRIMPOLQ96LW4 560 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 C2orf40Q9H1Z8 148 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 SUGCTQ9HAC7 445 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 TRAF3IP3Q9Y228 551 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 STYXL1Q9Y6J8 313 aa11.62□□□□□ -0.55
VPS33A-204ENST00000540669 A0A087WZ62 844 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.61□□□□□ -0.55
VPS33A-204ENST00000540669 DENND3A2RUS2 1198 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 K7ENM7 598 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 BIN1O00499 593 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 KIAA0355O15063 1070 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 SLC16A4O15374 487 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 FAM189A1O60320 539 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 CKBP12277 381 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 ERCC5P28715 1186 aaPredicted RBP11.61□□□□□ -0.55
VPS33A-204ENST00000540669 PHKA2P46019 1235 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 CRYBB1P53674 252 aaPredicted RBP11.61□□□□□ -0.55
VPS33A-204ENST00000540669 PMS1P54277 932 aaKnown RBP11.61□□□□□ -0.55
VPS33A-204ENST00000540669 NLRP11P59045 1033 aaKnown RBP11.61□□□□□ -0.55
VPS33A-204ENST00000540669 TLE2Q04725 743 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 TFDP1Q14186 410 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 NCAPHQ15003 741 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 ZC2HC1CQ53FD0 456 aaPredicted RBP11.61□□□□□ -0.55
VPS33A-204ENST00000540669 FAM47CQ5HY64 1035 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 PRPF38BQ5VTL8 546 aaKnown RBP11.61□□□□□ -0.55
VPS33A-204ENST00000540669 ZPBP2Q6X784 338 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 LRRC55Q6ZSA7 311 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 FAM43BQ6ZT52 329 aaPredicted RBP11.61□□□□□ -0.55
VPS33A-204ENST00000540669 SRGAP1Q7Z6B7 1085 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 RHPN2Q8IUC4 686 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 METTL13Q8N6R0 699 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 RNF149Q8NC42 400 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 IFT74Q96LB3 600 aa11.61□□□□□ -0.55
VPS33A-204ENST00000540669 FDXACB1Q9BRP7 624 aaPredicted RBP11.61□□□□□ -0.55
VPS33A-204ENST00000540669 CELF4Q9BZC1 486 aaKnown RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms