RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 SFPQP23246 707 aaKnown RBP eCLIP13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 CIITAP33076 1130 aa13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 NECTIN1Q15223 517 aa13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 TARBP2Q15633 366 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 PRR16Q569H4 304 aa13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 CREB3L3Q68CJ9 461 aa13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 ZNF280BQ86YH2 543 aa13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 RSAD2Q8WXG1 361 aa13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 RIN2Q8WYP3 895 aaPredicted RBP13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 RHOBTB2Q9BYZ6 727 aa13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 INO80BQ9C086 356 aaPredicted RBP13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 GBP3Q9H0R5 595 aa13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 WDR6Q9NNW5 1121 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 MRPL17Q9NRX2 175 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 FAM105AQ9NUU6 356 aa13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 INPP5FQ9Y2H2 1132 aa13.11□□□□□ -0.31
CLSTN3-209ENST00000539982 FRYLO94915 3013 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 A0A087WZ62 844 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 CCDC195A0A1B0GUA6 201 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 MEIS3P2A8K0S8 358 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 ZBTB43O43298 467 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 SSBP05455 408 aaKnown RBP eCLIP13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 SRFP11831 508 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 GBP2P32456 591 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 DNM2P50570 870 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 RAB27AP51159 221 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 PRKCEQ02156 737 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 DRP2Q13474 957 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 PHLDB3Q6NSJ2 640 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 ZC3H14Q6PJT7 736 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 RUBCNQ92622 972 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 STAMQ92783 540 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 PGBD4Q96DM1 585 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 FDXACB1Q9BRP7 624 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 NIFKQ9BYG3 293 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 ZMYND12Q9H0C1 365 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 TBC1D17Q9HA65 648 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 C6orf50Q9HD87 102 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 DLL3Q9NYJ7 618 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 EPS15L1Q9UBC2 864 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 DPP7Q9UHL4 492 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 BRPF3Q9ULD4 1205 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 CA14Q9ULX7 337 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 PIN4Q9Y237 131 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 FAN1Q9Y2M0 1017 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 SIT1Q9Y3P8 196 aa13.1□□□□□ -0.31
CLSTN3-209ENST00000539982 DNAH14Q0VDD8 3507 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 C2orf16Q68DN1 1984 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 IGKV6-21A0A0C4DH24 114 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 ESYT2A0FGR8 921 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 ADAMTS3O15072 1205 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 B4GALT3O60512 393 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 DDHD2O94830 711 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 SP9P0CG40 484 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 SFNP31947 248 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 EXOSC10Q01780 885 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 UGCGQ16739 394 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 PFKFB3Q16875 520 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 ELMSAN1Q6PJG2 1045 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 ZNF410Q86VK4 478 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 C1orf210Q8IVY1 113 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 REXO1Q8N1G1 1221 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 URGCPQ8TCY9 931 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 LENG9Q96B70 501 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 RIT2Q99578 217 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 HINFPQ9BQA5 517 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 TMEM175Q9BSA9 504 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 MAN1C1Q9NR34 630 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 FAM217BQ9NTX9 383 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 DLGAP2Q9P1A6 1054 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 KANSL3Q9P2N6 904 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 SSX2IPQ9Y2D8 614 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 WDR81Q562E7 1941 aa13.09□□□□□ -0.31
CLSTN3-209ENST00000539982 MSH4O15457 936 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 ADH1AP07327 375 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 DCNP07585 359 aaKnown RBP13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 CDC27P30260 824 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 JAK3P52333 1124 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 SPECC1Q5M775 1068 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 CATSPER4Q7RTX7 472 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 MRPL10Q7Z7H8 261 aaKnown RBP13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 DCLK2Q8N568 766 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 GPR152Q8TDT2 470 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 FAM193BQ96PV7 902 aaPredicted RBP13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 RPS6KC1Q96S38 1066 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 MYADMQ96S97 322 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 CEP89Q96ST8 783 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 SUCLA2Q9P2R7 463 aaPredicted RBP13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 PCDHB2Q9Y5E7 798 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 CLUHO75153 1309 aa13.08□□□□□ -0.32
CLSTN3-209ENST00000539982 OTOGLQ3ZCN5 2332 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 NCOR2Q9Y618 2525 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 GOLGA8AA7E2F4 631 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 GOLGA8BA8MQT2 603 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 C2CD2LO14523 706 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 NRP1O14786 923 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 INPPL1O15357 1258 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 TEX28O15482 410 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 GAS7O60861 476 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 STBD1O95210 358 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms