RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 ZNF668Q96K58 619 aaPredicted RBP13.65□□□□□ -0.22
YBX3-207ENST00000539204 SCLT1Q96NL6 688 aa13.65□□□□□ -0.22
YBX3-207ENST00000539204 PARD6AQ9NPB6 346 aa13.65□□□□□ -0.22
YBX3-207ENST00000539204 DNAJB4Q9UDY4 337 aa13.65□□□□□ -0.22
YBX3-207ENST00000539204 INPP5FQ9Y2H2 1132 aa13.65□□□□□ -0.22
YBX3-207ENST00000539204 MAFBQ9Y5Q3 323 aaPredicted RBP13.65□□□□□ -0.22
YBX3-207ENST00000539204 C2CD2LO14523 706 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 OFD1O75665 1012 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 RFPL2O75678 378 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 GLUD1P00367 558 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 ZNF76P36508 570 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 GPC3P51654 580 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 AK2P54819 239 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 HTR4Q13639 388 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 ZNF280BQ86YH2 543 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 SRBD1Q8N5C6 995 aaKnown RBP13.64□□□□□ -0.23
YBX3-207ENST00000539204 ST13P5Q8NFI4 369 aaPredicted RBP13.64□□□□□ -0.23
YBX3-207ENST00000539204 IGDCC4Q8TDY8 1250 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 HDAC7Q8WUI4 952 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 NLRP7Q8WX94 980 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 NELL1Q92832 810 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 LPPQ93052 612 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 PHKBQ93100 1093 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 DDX23Q9BUQ8 820 aaKnown RBP13.64□□□□□ -0.23
YBX3-207ENST00000539204 TRAIPQ9BWF2 469 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 ANGPTL2Q9UKU9 493 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 RAB23Q9ULC3 237 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 FAN1Q9Y2M0 1017 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 MTF2Q9Y483 593 aaPredicted RBP13.64□□□□□ -0.23
YBX3-207ENST00000539204 ZFP37Q9Y6Q3 630 aaPredicted RBP13.64□□□□□ -0.23
YBX3-207ENST00000539204 U3KPZ7 1027 aaPredicted RBP13.64□□□□□ -0.23
YBX3-207ENST00000539204 FAM208BQ5VWN6 2430 aa13.64□□□□□ -0.23
YBX3-207ENST00000539204 C2orf16Q68DN1 1984 aa13.63□□□□□ -0.23
YBX3-207ENST00000539204 LAMA4Q16363 1823 aa13.63□□□□□ -0.23
YBX3-207ENST00000539204 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.63□□□□□ -0.23
YBX3-207ENST00000539204 NCAM2O15394 837 aa13.63□□□□□ -0.23
YBX3-207ENST00000539204 GAS2O43903 313 aaKnown RBP13.63□□□□□ -0.23
YBX3-207ENST00000539204 CSDE1O75534 798 aaKnown RBP13.63□□□□□ -0.23
YBX3-207ENST00000539204 URODP06132 367 aa13.63□□□□□ -0.23
YBX3-207ENST00000539204 SPEM2Q0P670 501 aa13.63□□□□□ -0.23
YBX3-207ENST00000539204 MLF2Q15773 248 aaPredicted RBP13.63□□□□□ -0.23
YBX3-207ENST00000539204 ZBTB41Q5SVQ8 909 aa13.63□□□□□ -0.23
YBX3-207ENST00000539204 TWF2Q6IBS0 349 aaKnown RBP13.63□□□□□ -0.23
YBX3-207ENST00000539204 GET4Q7L5D6 327 aaPredicted RBP13.63□□□□□ -0.23
YBX3-207ENST00000539204 CMTR1Q8N1G2 835 aaKnown RBP13.63□□□□□ -0.23
YBX3-207ENST00000539204 LRRC71Q8N4P6 559 aa13.63□□□□□ -0.23
YBX3-207ENST00000539204 NCOA7Q8NI08 942 aa13.63□□□□□ -0.23
YBX3-207ENST00000539204 FAM193BQ96PV7 902 aaPredicted RBP13.63□□□□□ -0.23
YBX3-207ENST00000539204 RPS6KC1Q96S38 1066 aa13.63□□□□□ -0.23
YBX3-207ENST00000539204 RPP25Q9BUL9 199 aaKnown RBP13.63□□□□□ -0.23
YBX3-207ENST00000539204 FAM126AQ9BYI3 521 aaPredicted RBP13.63□□□□□ -0.23
YBX3-207ENST00000539204 NT5C3AQ9H0P0 336 aa13.63□□□□□ -0.23
YBX3-207ENST00000539204 ASPMQ8IZT6 3477 aa13.63□□□□□ -0.23
YBX3-207ENST00000539204 TEX28O15482 410 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 DHX15O43143 795 aaKnown RBP13.62□□□□□ -0.23
YBX3-207ENST00000539204 DDAH1O94760 285 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 PLEKHA8P1O95397 391 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 FOSP01100 380 aaPredicted RBP13.62□□□□□ -0.23
YBX3-207ENST00000539204 SOD2P04179 222 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 SPATA31D3P0C874 917 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 CDC42EP1Q00587 391 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 ACAP1Q15027 740 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 TSSK4Q6SA08 328 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 RSPO2Q6UXX9 243 aaPredicted RBP13.62□□□□□ -0.23
YBX3-207ENST00000539204 SPATA31D4Q6ZUB0 917 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 ZNF654Q8IZM8 581 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 LINC01465Q8N7H1 131 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 URGCPQ8TCY9 931 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 DDX1Q92499 740 aaKnown RBP13.62□□□□□ -0.23
YBX3-207ENST00000539204 ZNF707Q96C28 371 aaPredicted RBP13.62□□□□□ -0.23
YBX3-207ENST00000539204 PGBD4Q96DM1 585 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 NELL2Q99435 816 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 TMEM175Q9BSA9 504 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 MYL10Q9BUA6 226 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 GCOM2Q9BZD3 368 aaPredicted RBP13.62□□□□□ -0.23
YBX3-207ENST00000539204 PLEKHA4Q9H4M7 779 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 LY9Q9HBG7 655 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 NRBP2Q9NSY0 501 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 KANSL3Q9P2N6 904 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 PCDHA10Q9Y5I2 948 aa13.62□□□□□ -0.23
YBX3-207ENST00000539204 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.62□□□□□ -0.23
YBX3-207ENST00000539204 hCG_1642624A0A1W2PR95 340 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 NRP1O14786 923 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 ZNF623O75123 536 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 DDHD2O94830 711 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 PSAPP07602 524 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 CD72P21854 359 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 NRLP54845 237 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 PFKPQ01813 784 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 PARM1Q6UWI2 310 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 NIPA1Q7RTP0 329 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 HEATR3Q7Z4Q2 680 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 PLA2G4DQ86XP0 818 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 PALB2Q86YC2 1186 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 CCDC82Q8N4S0 544 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 FGF14Q92915 247 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 FAM167AQ96KS9 214 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 PRKD2Q9BZL6 878 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 LNPKQ9C0E8 428 aa13.61□□□□□ -0.23
YBX3-207ENST00000539204 LTB4R2Q9NPC1 389 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms