RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 BARX2Q9UMQ3 279 aaPredicted RBP14.67□□□□□ -0.06
RTN3-207ENST00000536011 ASAP2O43150 1006 aa14.66□□□□□ -0.06
RTN3-207ENST00000536011 CSDE1O75534 798 aaKnown RBP14.66□□□□□ -0.06
RTN3-207ENST00000536011 CTDNEP1O95476 244 aa14.66□□□□□ -0.06
RTN3-207ENST00000536011 ATF7P17544 494 aaPredicted RBP14.66□□□□□ -0.06
RTN3-207ENST00000536011 SRGAP1Q7Z6B7 1085 aa14.66□□□□□ -0.06
RTN3-207ENST00000536011 SLC39A11Q8N1S5 342 aa14.66□□□□□ -0.06
RTN3-207ENST00000536011 HAS1Q92839 578 aa14.66□□□□□ -0.06
RTN3-207ENST00000536011 TMEM169Q96HH4 297 aa14.66□□□□□ -0.06
RTN3-207ENST00000536011 CCDC43Q96MW1 224 aaKnown RBP14.66□□□□□ -0.06
RTN3-207ENST00000536011 GJB4Q9NTQ9 266 aa14.66□□□□□ -0.06
RTN3-207ENST00000536011 AGPAT5Q9NUQ2 364 aa14.66□□□□□ -0.06
RTN3-207ENST00000536011 FAM105AQ9NUU6 356 aa14.66□□□□□ -0.06
RTN3-207ENST00000536011 STK39Q9UEW8 545 aa14.66□□□□□ -0.06
RTN3-207ENST00000536011 USP15Q9Y4E8 981 aaPredicted RBP14.66□□□□□ -0.06
RTN3-207ENST00000536011 PCDHGC5Q9Y5F6 944 aa14.66□□□□□ -0.06
RTN3-207ENST00000536011 PER2O15055 1255 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 NEMFO60524 1076 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 ZNF623O75123 536 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 HOXB8P17481 243 aaPredicted RBP14.65□□□□□ -0.06
RTN3-207ENST00000536011 NEK4P51957 841 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 NPEPPSP55786 919 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 BCAR1P56945 870 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 RNASELQ05823 741 aaKnown RBP14.65□□□□□ -0.06
RTN3-207ENST00000536011 NCBP1Q09161 790 aaKnown RBP14.65□□□□□ -0.06
RTN3-207ENST00000536011 NR5A1Q13285 461 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 MXD4Q14582 209 aaPredicted RBP14.65□□□□□ -0.06
RTN3-207ENST00000536011 EMC2Q15006 297 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 PCBP1Q15365 356 aaKnown RBP eCLIP14.65□□□□□ -0.061e-11■■■□□ 14.6
RTN3-207ENST00000536011 SAFBQ15424 915 aaKnown RBP eCLIP14.65□□□□□ -0.06
RTN3-207ENST00000536011 CALCRLQ16602 461 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 ME3Q16798 604 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 XKR9Q5GH70 373 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 TMEM184AQ6ZMB5 413 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 KSR1Q8IVT5 923 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 NECAB1Q8N987 351 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 TMEM87AQ8NBN3 555 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 URGCPQ8TCY9 931 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 PRPF31Q8WWY3 499 aaKnown RBP14.65□□□□□ -0.06
RTN3-207ENST00000536011 PCDHA12Q9UN75 941 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 CNTNAP2Q9UHC6 1331 aa14.65□□□□□ -0.06
RTN3-207ENST00000536011 TRIOO75962 3097 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 ZC3H11AO75152 810 aaKnown RBP eCLIP14.64□□□□□ -0.072e-7■■■■■ 30.4
RTN3-207ENST00000536011 ERLIN2O94905 339 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 SRGAP2CP0DJJ0 459 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 FDPSP14324 419 aaKnown RBP14.64□□□□□ -0.07
RTN3-207ENST00000536011 PBX3P40426 434 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 CYP4A11Q02928 519 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 SPIRE1Q08AE8 756 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 LAMTOR4Q0VGL1 99 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 GIT2Q14161 759 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 TFDP1Q14186 410 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 TPRNQ4KMQ1 711 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 HERC4Q5GLZ8 1057 aaPredicted RBP14.64□□□□□ -0.07
RTN3-207ENST00000536011 NOMO2Q5JPE7 1267 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 RNF135Q8IUD6 432 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 TPH2Q8IWU9 490 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 DIS3L2Q8IYB7 885 aaKnown RBP14.64□□□□□ -0.07
RTN3-207ENST00000536011 NSUN7Q8NE18 718 aaKnown RBP14.64□□□□□ -0.07
RTN3-207ENST00000536011 CASP10Q92851 521 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 TNFRSF25Q93038 417 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 TMEM143Q96AN5 459 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 DYDC2Q96IM9 177 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 MTRQ99707 1265 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 PHF7Q9BWX1 381 aaPredicted RBP14.64□□□□□ -0.07
RTN3-207ENST00000536011 IFT122Q9HBG6 1241 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 RGL1Q9NZL6 768 aa14.64□□□□□ -0.07
RTN3-207ENST00000536011 HIDE1A8MVS5 230 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 LYPLA2O95372 231 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 CA8P35219 290 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 TECP42680 631 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 EARS2Q5JPH6 523 aaKnown RBP14.63□□□□□ -0.07
RTN3-207ENST00000536011 ANKRD54Q6NXT1 300 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 FERMT3Q86UX7 667 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 MRPL43Q8N983 215 aaKnown RBP14.63□□□□□ -0.07
RTN3-207ENST00000536011 RNF149Q8NC42 400 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 CNNM3Q8NE01 707 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 CCDC51Q96ER9 411 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 EIF2AK1Q9BQI3 630 aaKnown RBP14.63□□□□□ -0.07
RTN3-207ENST00000536011 UBN1Q9NPG3 1134 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 ANKEF1Q9NU02 776 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 KANSL3Q9P2N6 904 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 WRAP73Q9P2S5 460 aaPredicted RBP14.63□□□□□ -0.07
RTN3-207ENST00000536011 MUTYHQ9UIF7 546 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 INPP5FQ9Y2H2 1132 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 PCDHB2Q9Y5E7 798 aa14.63□□□□□ -0.07
RTN3-207ENST00000536011 LOC730098B7Z3J9 87 aa14.62□□□□□ -0.07
RTN3-207ENST00000536011 DGAT1O75907 488 aa14.62□□□□□ -0.07
RTN3-207ENST00000536011 LARGE1O95461 756 aa14.62□□□□□ -0.07
RTN3-207ENST00000536011 AXLP30530 894 aa14.62□□□□□ -0.07
RTN3-207ENST00000536011 CTTNQ14247 550 aaKnown RBP14.62□□□□□ -0.07
RTN3-207ENST00000536011 CBX2Q14781 532 aaPredicted RBP14.62□□□□□ -0.07
RTN3-207ENST00000536011 CES5AQ6NT32 575 aa14.62□□□□□ -0.07
RTN3-207ENST00000536011 LLGL2Q6P1M3 1020 aa14.62□□□□□ -0.07
RTN3-207ENST00000536011 ZNF579Q8NAF0 562 aaKnown RBP14.62□□□□□ -0.07
RTN3-207ENST00000536011 VN1R2Q8NFZ6 395 aa14.62□□□□□ -0.07
RTN3-207ENST00000536011 SUSD6Q92537 303 aa14.62□□□□□ -0.07
RTN3-207ENST00000536011 LPPQ93052 612 aa14.62□□□□□ -0.07
RTN3-207ENST00000536011 TTC12Q9H892 705 aaPredicted RBP14.62□□□□□ -0.07
RTN3-207ENST00000536011 BMP2KQ9NSY1 1161 aaPredicted RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms