RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ZNF662	Q6ZS27	426 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	NECAB2	Q7Z6G3	386 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	SPATS2	Q86XZ4	545 aa	Known RBP	6.6	□□□□□ -1.35
CD44-231	ENST00000531110	KRTAP1-3	Q8IUG1	177 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	ANKRD13A	Q8IZ07	590 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	OR5AN1	Q8NGI8	311 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	SEC61A2	Q9H9S3	476 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	MSRA	Q9UJ68	235 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110		A0A0A6YYJ9	748 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	BTBD11	A6QL63	1104 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110		K7ESF4	209 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	RAB11FIP3	O75154	756 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	TDO2	P48775	406 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	GPR15	P49685	360 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	GTF2A1	P52655	376 aa	Predicted RBP	6.59	□□□□□ -1.35
CD44-231	ENST00000531110	EPHB4	P54760	987 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	NFYC	Q13952	458 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	WDR78	Q5VTH9	848 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	BCL6B	Q8N143	479 aa	Predicted RBP	6.59	□□□□□ -1.35
CD44-231	ENST00000531110	ZNF496	Q96IT1	587 aa	Predicted RBP	6.59	□□□□□ -1.35
CD44-231	ENST00000531110	MYL10	Q9BUA6	226 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	POFUT1	Q9H488	388 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	CGN	Q9P2M7	1197 aa	Known RBP	6.59	□□□□□ -1.35
CD44-231	ENST00000531110	SMC3	Q9UQE7	1217 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	ATP8A1	Q9Y2Q0	1164 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	NUMBL	Q9Y6R0	609 aa		6.59	□□□□□ -1.35
CD44-231	ENST00000531110	KANK1	Q14678	1352 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	ST20-MTHFS	A0A0A6YYL1	179 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	PMS2P1	A4D2B8	440 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	MAGEA8	P43361	318 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	KCNJ4	P48050	445 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	CCDC173	Q0VFZ6	552 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	SYCP1	Q15431	976 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	ZNF568	Q3ZCX4	644 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	GORAB	Q5T7V8	394 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	KLHL10	Q6JEL2	608 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	CCDC91	Q7Z6B0	441 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	CXorf67	Q86X51	503 aa	Predicted RBP	6.58	□□□□□ -1.36
CD44-231	ENST00000531110	FAM9B	Q8IZU0	186 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	WDR66	Q8TBY9	1149 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	GFM2	Q969S9	779 aa	Known RBP	6.58	□□□□□ -1.36
CD44-231	ENST00000531110	ACAP3	Q96P50	834 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	OSBPL6	Q9BZF3	934 aa		6.58	□□□□□ -1.36
CD44-231	ENST00000531110	SAE1	Q9UBE0	346 aa	Predicted RBP	6.58	□□□□□ -1.36
CD44-231	ENST00000531110		A0A0G2JLL6	359 aa	Predicted RBP	6.57	□□□□□ -1.36
CD44-231	ENST00000531110	CCDC189	A1A4V9	331 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	ANKRD18B	A2A2Z9	1011 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	GOLGA6L6	A8MZA4	724 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	LAMTOR5	O43504	91 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	KDM1A	O60341	852 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	OPHN1	O60890	802 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	PLAT	P00750	562 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	PFKM	P08237	780 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	SCP2	P22307	547 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	ADCY8	P40145	1251 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	ID4	P47928	161 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	MEOX1	P50221	254 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	KCNQ1	P51787	676 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	PSMC1	P62191	440 aa	Known RBP	6.57	□□□□□ -1.36
CD44-231	ENST00000531110	BECN1	Q14457	450 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	NFIX	Q14938	502 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	NOLC1	Q14978	699 aa	Known RBP eCLIP	6.57	□□□□□ -1.36
CD44-231	ENST00000531110	AGBL4	Q5VU57	503 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	KLHDC10	Q6PID8	442 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	CLRN3	Q8NCR9	226 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	NKD2	Q969F2	451 aa	Predicted RBP	6.57	□□□□□ -1.36
CD44-231	ENST00000531110	FERMT2	Q96AC1	680 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	BORCS6	Q96GS4	357 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	TMX4	Q9H1E5	349 aa	Predicted RBP	6.57	□□□□□ -1.36
CD44-231	ENST00000531110	OR10A2	Q9H208	303 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	RANBP17	Q9H2T7	1088 aa	Known RBP	6.57	□□□□□ -1.36
CD44-231	ENST00000531110	MTG2	Q9H4K7	406 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	POLR3B	Q9NW08	1133 aa	Predicted RBP	6.57	□□□□□ -1.36
CD44-231	ENST00000531110	INVS	Q9Y283	1065 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	ZDHHC9	Q9Y397	364 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	NOC2L	Q9Y3T9	749 aa	Known RBP	6.57	□□□□□ -1.36
CD44-231	ENST00000531110	DUSP10	Q9Y6W6	482 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	NACAD	O15069	1562 aa		6.57	□□□□□ -1.36
CD44-231	ENST00000531110	ELL2	O00472	640 aa	Predicted RBP	6.56	□□□□□ -1.36
CD44-231	ENST00000531110	MPHOSPH10	O00566	681 aa	Known RBP	6.56	□□□□□ -1.36
CD44-231	ENST00000531110	H2AFY	O75367	372 aa	Known RBP	6.56	□□□□□ -1.36
CD44-231	ENST00000531110	CNR2	P34972	360 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	MANF	P55145	182 aa	Known RBP	6.56	□□□□□ -1.36
CD44-231	ENST00000531110	PPP2CB	P62714	309 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	PPP2CA	P67775	309 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	MAN2A1	Q16706	1144 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	UBXN11	Q5T124	520 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	LRCH2	Q5VUJ6	765 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	SLFN13	Q68D06	897 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	KRBA2	Q6ZNG9	492 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	ARHGEF18	Q6ZSZ5	1173 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	RTKN2	Q8IZC4	609 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	ATL2	Q8NHH9	583 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	PPP1R14C	Q8TAE6	165 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	HIST1H2AH	Q96KK5	128 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	HIST1H2AJ	Q99878	128 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	MENT	Q9BUN1	341 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	PUS7L	Q9H0K6	701 aa	Known RBP	6.56	□□□□□ -1.36
CD44-231	ENST00000531110	CWC25	Q9NXE8	425 aa	Predicted RBP	6.56	□□□□□ -1.36
CD44-231	ENST00000531110	OGFR	Q9NZT2	677 aa		6.56	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms