RNA–Protein interactions for RNA: ENST00000528621.5

CTNND1-219, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,907 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-219ENST00000528621 PDCD7Q8N8D1 485 aaKnown RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 PPWD1Q96BP3 646 aaKnown RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 TDRD3Q9H7E2 651 aaKnown RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 NFU1Q9UMS0 254 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 USP32Q8NFA0 1604 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 SLC1A1P43005 524 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 ESRRGP62508 458 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 EPHA7Q15375 998 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 DHX40Q8IX18 779 aaKnown RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 PRPF38AQ8NAV1 312 aaKnown RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 ZNF564Q8TBZ8 553 aaPredicted RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 TRAIPQ9BWF2 469 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 FSD1LQ9BXM9 530 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 ACAD9Q9H845 621 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 HPCAL4Q9UM19 191 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 TRIM33Q9UPN9 1127 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 WDR91A4D1P6 747 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 NSUN2Q08J23 767 aaKnown RBP eCLIP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 TRIM28Q13263 835 aaKnown RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 KIF19Q2TAC6 998 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 TEDDM1Q5T9Z0 273 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 RHPN2Q8IUC4 686 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 PASD1Q8IV76 773 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 GTF3C2Q8WUA4 911 aaPredicted RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 KIFC3Q9BVG8 833 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 SLITRK6Q9H5Y7 841 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 HACD3Q9P035 362 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 TARSL2A2RTX5 802 aaKnown RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 COPEO14579 308 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 EFNA5P52803 228 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 CYP27A1Q02318 531 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 HP1BP3Q5SSJ5 553 aaPredicted RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 RNF219Q5W0B1 726 aaPredicted RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 TMEM270Q6UE05 265 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 SPDYE1Q8NFV5 336 aaPredicted RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 ZNF526Q8TF50 670 aaPredicted RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 EIF2AQ9BY44 585 aaKnown RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 ABCF3Q9NUQ8 709 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 KLHL8Q9P2G9 620 aaPredicted RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 FAF1Q9UNN5 650 aaPredicted RBP9.06□□□□□ -0.96
CTNND1-219ENST00000528621 AFF2P51816 1311 aa9.06□□□□□ -0.96
CTNND1-219ENST00000528621 POLR1AO95602 1720 aaPredicted RBP9.05□□□□□ -0.96
CTNND1-219ENST00000528621 POTEB3A0JP26 581 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 POTECB2RU33 542 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 SNX2O60749 519 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 CSPG5O95196 566 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 CDC27P30260 824 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 GNA15P30679 374 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 KCNH2Q12809 1159 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 SBK1Q52WX2 424 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 POTEBQ6S5H4 581 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 LRRC31Q6UY01 552 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.05□□□□□ -0.964e-16■□□□□ 9.4
CTNND1-219ENST00000528621 RNF146Q9NTX7 359 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 ZNF212Q9UDV6 495 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 STAP1Q9ULZ2 295 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 USP17L15C9J2P7 530 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 USP17L13C9JLJ4 530 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 USP17L11C9JVI0 530 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 USP17L18D6R9N7 530 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 USP17L22D6RA61 530 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 USP17L17D6RBQ6 530 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 USP17L19D6RCP7 530 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 USP17L20D6RJB6 530 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 EYA4O95677 639 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 ATP1A3P13637 1013 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 HOXD10P28358 340 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 SMARCA1P28370 1054 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 GCLMP48507 274 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 USP17L24Q0WX57 530 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 DHX34Q14147 1143 aaKnown RBP9.05□□□□□ -0.96
CTNND1-219ENST00000528621 SWSAP1Q6NVH7 229 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 USP17L6PQ6QN14 398 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 NEDD1Q8NHV4 660 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 EXT2Q93063 718 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 KLHL29Q96CT2 875 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 SNF8Q96H20 258 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 ACAP3Q96P50 834 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 EIF2AK1Q9BQI3 630 aaKnown RBP9.05□□□□□ -0.96
CTNND1-219ENST00000528621 UPF3AQ9H1J1 476 aaKnown RBP9.05□□□□□ -0.96
CTNND1-219ENST00000528621 GABBR1Q9UBS5 961 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 PDS5AQ29RF7 1337 aaKnown RBP9.05□□□□□ -0.96
CTNND1-219ENST00000528621 PSMD3O43242 534 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 ACSL3O95573 720 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 GCKP35557 465 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 STAT3P40763 770 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 ARHGEF1Q92888 912 aaKnown RBP9.05□□□□□ -0.96
CTNND1-219ENST00000528621 SPATA33Q96N06 139 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 MRPL46Q9H2W6 279 aaKnown RBP9.05□□□□□ -0.96
CTNND1-219ENST00000528621 ESRRAP11474 423 aaPredicted RBP9.05□□□□□ -0.96
CTNND1-219ENST00000528621 SKIP12755 728 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 PMS2P54278 862 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 RABL6Q3YEC7 729 aaPredicted RBP9.05□□□□□ -0.96
CTNND1-219ENST00000528621 ACAD11Q709F0 780 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 FASTKD5Q7L8L6 764 aaKnown RBP9.05□□□□□ -0.96
CTNND1-219ENST00000528621 CRAMP1Q96RY5 1269 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 LXNQ9BS40 222 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 TRIM55Q9BYV6 548 aa9.05□□□□□ -0.96
CTNND1-219ENST00000528621 TPX2Q9ULW0 747 aaKnown RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms