RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 DOCK5Q9H7D0 1870 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 SEPT4O43236 478 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 KPNA6O60684 536 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 KINO60870 393 aaKnown RBP8.25□□□□□ -1.09
CD44-228ENST00000528455 ARIH2O95376 493 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 MYL1P05976 194 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 CYBAP13498 195 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 AKR1A1P14550 325 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 PSMC5P62195 406 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 AMPD3Q01432 767 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 ARHGAP1Q07960 439 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 GRB10Q13322 594 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 HSDL1Q3SXM5 330 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 BRDTQ58F21 947 aaPredicted RBP8.25□□□□□ -1.09
CD44-228ENST00000528455 C1orf53Q5VUE5 145 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 SWSAP1Q6NVH7 229 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 KRBA2Q6ZNG9 492 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 SV2BQ7L1I2 683 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 OTUD6AQ7L8S5 288 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 TPH2Q8IWU9 490 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 ALDH16A1Q8IZ83 802 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 CNNM3Q8NE01 707 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 PPTC7Q8NI37 304 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 AFAP1L1Q8TED9 768 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 SNX29Q8TEQ0 813 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 ATP6V0A1Q93050 837 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 SYAP1Q96A49 352 aaPredicted RBP8.25□□□□□ -1.09
CD44-228ENST00000528455 DYDC2Q96IM9 177 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 PAWRQ96IZ0 340 aaKnown RBP8.25□□□□□ -1.09
CD44-228ENST00000528455 CDK5RAP3Q96JB5 506 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 SPATA33Q96N06 139 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 PNMA5Q96PV4 448 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 GPR20Q99678 358 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 PHACTR1Q9C0D0 580 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 AP5M1Q9H0R1 490 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 GOLPH3LQ9H4A5 285 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 MAGEF1Q9HAY2 307 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 GPAMQ9HCL2 828 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 NRBP2Q9NSY0 501 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 ANKEF1Q9NU02 776 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 CUEDC1Q9NWM3 386 aaPredicted RBP8.25□□□□□ -1.09
CD44-228ENST00000528455 DACT1Q9NYF0 836 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 RGL1Q9NZL6 768 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 NXF1Q9UBU9 619 aaKnown RBP8.25□□□□□ -1.09
CD44-228ENST00000528455 STK17AQ9UEE5 414 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 ZHX1Q9UKY1 873 aaPredicted RBP8.25□□□□□ -1.09
CD44-228ENST00000528455 LRRC37A2A6NM11 1700 aa8.25□□□□□ -1.09
CD44-228ENST00000528455 A0A087X0B3 334 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 PP2D1A8MPX8 630 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 H0YGN5 161 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 DDX39AO00148 427 aaKnown RBP8.24□□□□□ -1.09
CD44-228ENST00000528455 NOP56O00567 594 aaKnown RBP8.24□□□□□ -1.09
CD44-228ENST00000528455 DYNC1LI2O43237 492 aaPredicted RBP8.24□□□□□ -1.09
CD44-228ENST00000528455 MSCO60682 206 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 MED24O75448 989 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 SUPT20HL2P0C7V6 817 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 HOXD8P13378 290 aaPredicted RBP8.24□□□□□ -1.09
CD44-228ENST00000528455 STAT6P42226 847 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 STAT5BP51692 787 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 GJA9P57773 515 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 KARSQ15046 597 aaKnown RBP8.24□□□□□ -1.09
CD44-228ENST00000528455 ECM1Q16610 540 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 DGKDQ16760 1214 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 TMEM119Q4V9L6 283 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 TMEM63BQ5T3F8 832 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 EXOC8Q8IYI6 725 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 CEP57L1Q8IYX8 460 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 PDILTQ8N807 584 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 SYT2Q8N9I0 419 aaPredicted RBP8.24□□□□□ -1.09
CD44-228ENST00000528455 TRPV1Q8NER1 839 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 COL26A1Q96A83 441 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 MKNK1Q9BUB5 465 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 SMARCAD1Q9H4L7 1026 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 AZI2Q9H6S1 392 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 SPC25Q9HBM1 224 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 KBTBD4Q9NVX7 518 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 DBR1Q9UK59 544 aaKnown RBP8.24□□□□□ -1.09
CD44-228ENST00000528455 OGDHLQ9ULD0 1010 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 LOXHD1Q8IVV2 1947 aa8.24□□□□□ -1.09
CD44-228ENST00000528455 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.23□□□□□ -1.09
CD44-228ENST00000528455 CHMP2AO43633 222 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 EYA4O95677 639 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 RARBP10826 455 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 PLCG1P19174 1290 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 CNGA1P29973 690 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 CCND3P30281 292 aaPredicted RBP8.23□□□□□ -1.09
CD44-228ENST00000528455 TCF7P36402 384 aaPredicted RBP8.23□□□□□ -1.09
CD44-228ENST00000528455 CPT1AP50416 773 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 CTTNQ14247 550 aaKnown RBP8.23□□□□□ -1.09
CD44-228ENST00000528455 NAALADL2Q58DX5 795 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 XKR3Q5GH77 459 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 FAM160B1Q5W0V3 765 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 CNNM4Q6P4Q7 775 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 RIPOR1Q6ZS17 1223 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 OR6J1Q8NGC5 347 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 RASSF8Q8NHQ8 419 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 LARP4BQ92615 738 aaKnown RBP8.23□□□□□ -1.09
CD44-228ENST00000528455 COPS5Q92905 334 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 VTI1AQ96AJ9 217 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 DHX58Q96C10 678 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms