RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CHRDL2Q6WN34 429 aa16.91■□□□□ 0.3
LSM1-203ENST00000520755 TSHZ1Q6ZSZ6 1077 aa16.91■□□□□ 0.3
LSM1-203ENST00000520755 C16orf59Q7L2K0 433 aa16.91■□□□□ 0.3
LSM1-203ENST00000520755 ZNF410Q86VK4 478 aa16.91■□□□□ 0.3
LSM1-203ENST00000520755 ZNF710Q8N1W2 664 aa16.91■□□□□ 0.3
LSM1-203ENST00000520755 RNF149Q8NC42 400 aa16.91■□□□□ 0.3
LSM1-203ENST00000520755 GLIS3Q8NEA6 775 aa16.91■□□□□ 0.3
LSM1-203ENST00000520755 TMEM40Q8WWA1 233 aa16.91■□□□□ 0.3
LSM1-203ENST00000520755 KIFAP3Q92845 792 aa16.91■□□□□ 0.3
LSM1-203ENST00000520755 VWCEQ96DN2 955 aa16.91■□□□□ 0.3
LSM1-203ENST00000520755 DRC1Q96MC2 740 aa16.91■□□□□ 0.3
LSM1-203ENST00000520755 GCOM2Q9BZD3 368 aaPredicted RBP16.91■□□□□ 0.3
LSM1-203ENST00000520755 PARVGQ9HBI0 331 aa16.91■□□□□ 0.3
LSM1-203ENST00000520755 NOC2LQ9Y3T9 749 aaKnown RBP16.91■□□□□ 0.3
LSM1-203ENST00000520755 LRRIQ4A6NIV6 560 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 BIN1O00499 593 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 CSDE1O75534 798 aaKnown RBP16.9■□□□□ 0.3
LSM1-203ENST00000520755 RPS6KA5O75582 802 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 PFKMP08237 780 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 PLS3P13797 630 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 EIF4BP23588 611 aaKnown RBP16.9■□□□□ 0.3
LSM1-203ENST00000520755 CD52P31358 61 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 CASP5P51878 434 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 PAK2Q13177 524 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 PLEKHG4Q58EX7 1191 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 PSRC1Q6PGN9 363 aaPredicted RBP16.9■□□□□ 0.3
LSM1-203ENST00000520755 ZNF365Q70YC5 407 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 CCDC65Q8IXS2 484 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 KIAA0895Q8NCT3 520 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 DBF4BQ8NFT6 615 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 SEPT8Q92599 483 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 GSDMAQ96QA5 445 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.9■□□□□ 0.3
LSM1-203ENST00000520755 KIFC3Q9BVG8 833 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 IFIH1Q9BYX4 1025 aaKnown RBP16.9■□□□□ 0.3
LSM1-203ENST00000520755 AGO3Q9H9G7 860 aaKnown RBP16.9■□□□□ 0.3
LSM1-203ENST00000520755 GDAQ9Y2T3 454 aa16.9■□□□□ 0.3
LSM1-203ENST00000520755 SYCE3A1L190 88 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 SMC2O95347 1197 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 FGBP02675 491 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 ACTN1P12814 892 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 DARSP14868 501 aaKnown RBP16.89■□□□□ 0.29
LSM1-203ENST00000520755 GAP43P17677 238 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 FGFR4P22455 802 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 PHKA2P46019 1235 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 PEX3P56589 373 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 NFX1Q12986 1120 aaKnown RBP16.89■□□□□ 0.29
LSM1-203ENST00000520755 MORC3Q14149 939 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 TCTN1Q2MV58 587 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 TMEM240Q5SV17 173 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 PRPF38BQ5VTL8 546 aaKnown RBP16.89■□□□□ 0.29
LSM1-203ENST00000520755 CNKSR3Q6P9H4 555 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 OTOP2Q7RTS6 562 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 USP38Q8NB14 1042 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 IFT74Q96LB3 600 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 FUCA2Q9BTY2 467 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 ZHX3Q9H4I2 956 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 IFT122Q9HBG6 1241 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 OLFML3Q9NRN5 406 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 EXOC1Q9NV70 894 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 TBC1D7Q9P0N9 293 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 PADI3Q9ULW8 664 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 SQORQ9Y6N5 450 aa16.89■□□□□ 0.29
LSM1-203ENST00000520755 PPP1R37O75864 691 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 NMT1P30419 496 aaKnown RBP16.88■□□□□ 0.29
LSM1-203ENST00000520755 NPTX2P47972 431 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 NCKAP1LP55160 1127 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 STK4Q13043 487 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 PPP2R5AQ15172 486 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 HERC4Q5GLZ8 1057 aaPredicted RBP16.88■□□□□ 0.29
LSM1-203ENST00000520755 FAM26FQ5R3K3 315 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 ODR4Q5SWX8 454 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 C9orf50Q5SZB4 431 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 ISM2Q6H9L7 571 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 FAM228AQ86W67 206 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 SMYD4Q8IYR2 804 aaPredicted RBP16.88■□□□□ 0.29
LSM1-203ENST00000520755 MYCT1Q8N699 235 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 SEL1LQ9UBV2 794 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 ST3GAL5Q9UNP4 418 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 PTPRSQ13332 1948 aa16.88■□□□□ 0.29
LSM1-203ENST00000520755 CCDC169A6NNP5 214 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 ZBBXA8MT70 800 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 MYBP10242 640 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 BMP8BP34820 402 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 NAMPTP43490 491 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 PTENP60484 403 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 DMP1Q13316 513 aaPredicted RBP16.87■□□□□ 0.29
LSM1-203ENST00000520755 SHHQ15465 462 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 CDCA2Q69YH5 1023 aaPredicted RBP16.87■□□□□ 0.29
LSM1-203ENST00000520755 EPM2AIP1Q7L775 607 aaPredicted RBP16.87■□□□□ 0.29
LSM1-203ENST00000520755 TAS1R3Q7RTX0 852 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 ZBTB8OSQ8IWT0 167 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 DEPTORQ8TB45 409 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 SPIRE2Q8WWL2 714 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 APBB2Q92870 758 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 STRA6Q9BX79 667 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 INO80BQ9C086 356 aaPredicted RBP16.87■□□□□ 0.29
LSM1-203ENST00000520755 GZF1Q9H116 711 aaPredicted RBP16.87■□□□□ 0.29
LSM1-203ENST00000520755 MINDY3Q9H8M7 445 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 C17orf75Q9HAS0 396 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms