RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 AGO4Q9HCK5 861 aaKnown RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 FLRT1Q9NZU1 646 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 ZNF215Q9UL58 517 aaPredicted RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 NOL7Q9UMY1 257 aaKnown RBP3.2□□□□□ -1.9
MCF2-208ENST00000519895 RIPK3Q9Y572 518 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 DMXL1Q9Y485 3027 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 ASTN1O14525 1302 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 NRCAMQ92823 1304 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 SYNRGQ9UMZ2 1314 aa3.2□□□□□ -1.9
MCF2-208ENST00000519895 SMIM35A0A1B0GVV1 85 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 SMCO2A6NFE2 343 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 RFXAPO00287 272 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 DHX15O43143 795 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 NMT2O60551 498 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 SHOX2O60902 331 aaPredicted RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 PSMD10O75832 226 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 BAG4O95429 457 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 CTDNEP1O95476 244 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 PDGFBP01127 241 aaPredicted RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 C8AP07357 584 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 MMP3P08254 477 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 BFSP2Q13515 415 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 SAFBQ15424 915 aaKnown RBP eCLIP3.19□□□□□ -1.9
MCF2-208ENST00000519895 FAM187BQ17R55 369 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 TRIM71Q2Q1W2 868 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 ARHGEF16Q5VV41 709 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 RTL10Q7L3V2 364 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 ETNPPLQ8TBG4 499 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 SEPT1Q8WYJ6 367 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 MTMR9Q96QG7 549 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 RMDN3Q96TC7 470 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 LRRC27Q9C0I9 530 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 FAM124BQ9H5Z6 455 aaPredicted RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 FBXO28Q9NVF7 368 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 TPCN1Q9ULQ1 816 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 ITPR1Q14643 2758 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 E9PAM4 449 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 H0YCG3 227 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 K7ELQ4 463 aaPredicted RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 CPLX1O14810 134 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 HBP1O60381 514 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 RECKO95980 971 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 POU2F2P09086 479 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 ALAS1P13196 640 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 CEACAM1P13688 526 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 FDPSP14324 419 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 AXLP30530 894 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 DDIT3P35638 169 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 LTBRP36941 435 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 SCNN1AP37088 669 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 NAPAP54920 295 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 ARHGAP4P98171 946 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 PURAQ00577 322 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 FAAP100Q0VG06 881 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 TARBP2Q15633 366 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 KYAT1Q16773 422 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 SHROOM1Q2M3G4 852 aaPredicted RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 COBLL1Q53SF7 1204 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 RRP12Q5JTH9 1297 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 MIS18BP1Q6P0N0 1132 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 XKR5Q6UX68 686 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 ABHD15Q6UXT9 468 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 NEK8Q86SG6 692 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 ZNF410Q86VK4 478 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 STK32AQ8WU08 396 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 FERMT2Q96AC1 680 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 LENG9Q96B70 501 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 MSLNLQ96KJ4 702 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 SDF4Q9BRK5 362 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 PI4K2AQ9BTU6 479 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 SCNM1Q9BWG6 230 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 RAB34Q9BZG1 259 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 ST6GALNAC4Q9H4F1 302 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 CHST12Q9NRB3 414 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 ZSCAN32Q9NX65 697 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 RWDD3Q9Y3V2 267 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 PCDHA2Q9Y5H9 948 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 CFAP46Q8IYW2 2715 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 DOCK3Q8IZD9 2030 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 NFIBO00712 420 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 PPP6R2O75170 966 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 PLEKHA8P1O95397 391 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 YEATS4O95619 227 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 AFPP02771 609 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 CA3P07451 260 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 PSAPP07602 524 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 FAM163BP0C2L3 166 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 SKIP12755 728 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 C6P13671 934 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 GRNP28799 593 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 NASPP49321 788 aaPredicted RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 ACLYP53396 1101 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 MRPS9P82933 396 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 ALCAMQ13740 583 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 TRIM29Q14134 588 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 FSCN1Q16658 493 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 ME3Q16798 604 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 CT47A1Q5JQC4 288 aaPredicted RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 TRAF7Q6Q0C0 670 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms