RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 LONRF1Q17RB8 773 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 P3H4Q92791 437 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 HOMER3Q9NSC5 361 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 IRAK4Q9NWZ3 460 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 CTTNBP2NLQ9P2B4 639 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 KLHL14Q9P2G3 628 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 ARMCX3Q9UH62 379 aaPredicted RBP10.4□□□□□ -0.74
VCAN-210ENST00000513960 HDAC9Q9UKV0 1011 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 PNMA3Q9UL41 463 aa10.4□□□□□ -0.74
VCAN-210ENST00000513960 ATF5Q9Y2D1 282 aaPredicted RBP10.4□□□□□ -0.74
VCAN-210ENST00000513960 LRRD1A4D1F6 860 aa10.4□□□□□ -0.75
VCAN-210ENST00000513960 EIF3BP55884 814 aaKnown RBP10.4□□□□□ -0.75
VCAN-210ENST00000513960 ARHGAP4P98171 946 aa10.4□□□□□ -0.75
VCAN-210ENST00000513960 FOXR2Q6PJQ5 311 aa10.4□□□□□ -0.75
VCAN-210ENST00000513960 ZNF572Q7Z3I7 529 aaPredicted RBP10.4□□□□□ -0.75
VCAN-210ENST00000513960 FBXO25Q8TCJ0 367 aa10.4□□□□□ -0.75
VCAN-210ENST00000513960 CCHCR1Q8TD31 782 aa10.4□□□□□ -0.75
VCAN-210ENST00000513960 STMN4Q9H169 189 aaPredicted RBP10.4□□□□□ -0.75
VCAN-210ENST00000513960 DNM3Q9UQ16 869 aa10.4□□□□□ -0.75
VCAN-210ENST00000513960 F5H6K3 240 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 MMP10P09238 476 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 NEFHP12036 1026 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 GBP1P32455 592 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 STAT3P40763 770 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 ERFP50548 548 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 KLRC3Q07444 240 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 CALCOCO2Q13137 446 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 SNX1Q13596 522 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 BYSLQ13895 437 aaKnown RBP10.39□□□□□ -0.75
VCAN-210ENST00000513960 TRIP13Q15645 432 aaPredicted RBP10.39□□□□□ -0.75
VCAN-210ENST00000513960 HYIQ5T013 277 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 SAMD1Q6SPF0 538 aaPredicted RBP10.39□□□□□ -0.75
VCAN-210ENST00000513960 TMEM179Q6ZVK1 233 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 ZNF571Q7Z3V5 609 aaPredicted RBP10.39□□□□□ -0.75
VCAN-210ENST00000513960 FBXO11Q86XK2 927 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 SYCE1Q8N0S2 351 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 OSGEPQ9NPF4 335 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 ASIC3Q9UHC3 531 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 GGA2Q9UJY4 613 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 AGAP1Q9UPQ3 857 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 CFAP73A6NFT4 308 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 DDTLA6NHG4 134 aaPredicted RBP10.39□□□□□ -0.75
VCAN-210ENST00000513960 FOXO6A8MYZ6 492 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 PDE6CP51160 858 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 RAD23BP54727 409 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 SLC8A3P57103 927 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 TNIP1Q15025 636 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 ABCB5Q2M3G0 1257 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 MUM1Q2TAK8 710 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 ERMARDQ5T6L9 678 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 CAPN12Q6ZSI9 719 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 TRMT1LQ7Z2T5 733 aaKnown RBP10.39□□□□□ -0.75
VCAN-210ENST00000513960 MKL1Q969V6 931 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 BATF3Q9NR55 127 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 KCNQ5Q9NR82 932 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 POTEFA5A3E0 1075 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 LRRN2O75325 713 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 GDF11O95390 407 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 POTEIP0CG38 1075 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 XRCC5P13010 732 aaKnown RBP10.39□□□□□ -0.75
VCAN-210ENST00000513960 SNAP25P60880 206 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 PLS1Q14651 629 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 SETDB1Q15047 1291 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 GRIPAP1Q4V328 841 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 POTEGQ6S5H5 508 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 POTEEQ6S8J3 1075 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 LONP2Q86WA8 852 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 GLYCTKQ8IVS8 523 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 PAGR1Q9BTK6 254 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 ADAM33Q9BZ11 813 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 MTFR1LQ9H019 292 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 SEMA4AQ9H3S1 761 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 NKIRAS1Q9NYS0 192 aa10.39□□□□□ -0.75
VCAN-210ENST00000513960 SLC26A4O43511 780 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 LGR5O75473 907 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 FOSP01100 380 aaPredicted RBP10.38□□□□□ -0.75
VCAN-210ENST00000513960 GHRP10912 638 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 CYP11B2P19099 503 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 CTCFP49711 727 aaPredicted RBP10.38□□□□□ -0.75
VCAN-210ENST00000513960 AADACL2Q6P093 401 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 RDH13Q8NBN7 331 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 ARHGEF2Q92974 986 aaKnown RBP10.38□□□□□ -0.75
VCAN-210ENST00000513960 DNAJC18Q9H819 358 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 KCNMB3Q9NPA1 279 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 PCDHGC5Q9Y5F6 944 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 UBR3Q6ZT12 1888 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 MEIS1O00470 390 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 KRT16P08779 473 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 TNFAIP3P21580 790 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 PABPC4Q13310 644 aaKnown RBP eCLIP10.38□□□□□ -0.75
VCAN-210ENST00000513960 ZCWPW2Q504Y3 356 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 STRIP1Q5VSL9 837 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 C3orf20Q8ND61 904 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 TPCN2Q8NHX9 752 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 ZCWPW1Q9H0M4 648 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 NR2E1Q9Y466 385 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 USP15Q9Y4E8 981 aaPredicted RBP10.38□□□□□ -0.75
VCAN-210ENST00000513960 PPIP5K2O43314 1243 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 MED24O75448 989 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 SSR1P43307 286 aaKnown RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms