RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CFBP00751 764 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 OSCARQ8IYS5 282 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 ZNF513Q8N8E2 541 aaPredicted RBP11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 AGBL1Q96MI9 1066 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 TRABDQ9H4I3 376 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 ZFYVE1Q9HBF4 777 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 ASNSD1Q9NWL6 643 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 TK2O00142 265 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 ZSCAN20P17040 1043 aaPredicted RBP11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 S100A1P23297 94 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 PRAMEP78395 509 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 GRM1Q13255 1194 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 CLEC17AQ6ZS10 378 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 ATP8B4Q8TF62 1192 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 SCFD1Q8WVM8 642 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 RBBP8Q99708 897 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 FRMD8Q9BZ67 464 aaPredicted RBP11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 OSBPL8Q9BZF1 889 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 PIGUQ9H490 435 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 ZCCHC17Q9NP64 241 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 UBN2Q6ZU65 1347 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 ITIH2P19823 946 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 VCPP55072 806 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 GPIHBP1Q8IV16 184 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 MICALL2Q8IY33 904 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 TMEM35BQ8NCS4 154 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 ZBED2Q9BTP6 218 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 SLC5A4Q9NY91 659 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 ADAMTS1Q9UHI8 967 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 PCDHA4Q9UN74 947 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 CARMIL3Q8ND23 1372 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 PRXQ9BXM0 1461 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 HNRNPDLO14979 420 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 CLPTM1O96005 669 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 GHRP10912 638 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 BFSP2Q13515 415 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 GPATCH4Q5T3I0 446 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 SPATA4Q8NEY3 305 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 CLIC6Q96NY7 704 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 EXOSC4Q9NPD3 245 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 EMILIN3Q9NT22 766 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 H2AFY2Q9P0M6 372 aaPredicted RBP11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 SLC8A2Q9UPR5 921 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 CDY2AQ9Y6F7 541 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 CDY1Q9Y6F8 540 aa11.89□□□□□ -0.51
LIMCH1-217ENST00000512946 MAP3K15Q6ZN16 1313 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 ZNF532Q9HCE3 1301 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 MED26O95402 600 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 TSTA3Q13630 321 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 CTTNQ14247 550 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 SLFN12LQ6IEE8 588 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 KRT74Q7RTS7 529 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 KRT27Q7Z3Y8 459 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 TAB3Q8N5C8 712 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 SPATA5Q8NB90 893 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 OTUD7AQ8TE49 926 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 FAM149B1Q96BN6 582 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 LDHAP00338 332 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 FCGR1AP12314 374 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 PSMC3P17980 439 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 TYK2P29597 1187 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 TIMM10P62072 90 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 CYP27A1Q02318 531 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 STX5Q13190 355 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 TRIP4Q15650 581 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 CCNYL1Q8N7R7 359 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 JARID2Q92833 1246 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 GLG1Q92896 1179 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 CAAP1Q9H8G2 361 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 LRRC4Q9HBW1 653 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 F8W031 263 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 PSMD3O43242 534 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 CLASP2O75122 1294 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 USP1O94782 785 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 RECQLP46063 649 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 UBE3CQ15386 1083 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 ATAD3BQ5T9A4 648 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 NAIF1Q69YI7 327 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 RSRC2Q7L4I2 434 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 ENOSF1Q7L5Y1 443 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 METTL23Q86XA0 190 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 KSR1Q8IVT5 923 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 PPM1NQ8N819 430 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 TSPYL6Q8N831 410 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 MRPL48Q96GC5 212 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 PLEKHA8Q96JA3 519 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 PPP1R2P1Q96PQ5 205 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 SAMSN1Q9NSI8 373 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 PDZK1P1A8MUH7 402 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 BIRC5O15392 142 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 SEC24DO94855 1032 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 SLC1A1P43005 524 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 SCRN1Q12765 414 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 TBL3Q12788 808 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 CCNI2Q6ZMN8 369 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 ERICH1Q86X53 443 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 ERP27Q96DN0 273 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 MYL10Q9BUA6 226 aa11.88□□□□□ -0.51
LIMCH1-217ENST00000512946 UBE2TQ9NPD8 197 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms