RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 SP8Q8IXZ3 490 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 ZDHHC14Q8IZN3 488 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 NEK9Q8TD19 979 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 SEC14L1Q92503 715 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 MKL1Q969V6 931 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 ELMO3Q96BJ8 720 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 BTBD6Q96KE9 485 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 SCLT1Q96NL6 688 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 EPB41L4BQ9H329 900 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 ZDHHC18Q9NUE0 388 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 TCRBV7S2A1N4TA0A589 114 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 ANKRD62A6NC57 917 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 KIAA0391O15091 583 aaKnown RBP10□□□□□ -0.81
LIMCH1-215ENST00000512632 RASSF9O75901 435 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 MMEP08473 750 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 FGFR4P22455 802 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 ANXA13P27216 316 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 RDXP35241 583 aaKnown RBP10□□□□□ -0.81
LIMCH1-215ENST00000512632 CHMP6Q96FZ7 201 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 CRAMP1Q96RY5 1269 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 DBR1Q9UK59 544 aaKnown RBP10□□□□□ -0.81
LIMCH1-215ENST00000512632 ATXN2Q99700 1313 aaKnown RBP10□□□□□ -0.81
LIMCH1-215ENST00000512632 A0A1W2PRG0 241 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 RGS16O15492 202 aaPredicted RBP10□□□□□ -0.81
LIMCH1-215ENST00000512632 MAP2K2P36507 400 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 NBPF9Q3BBW0 867 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 ANKRD20A8PQ5CZ79 823 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 ZDHHC24Q6UX98 284 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 PRELID2Q8N945 189 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 AGPAT1Q99943 283 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 MTFR1LQ9H019 292 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 PABPC3Q9H361 631 aaKnown RBP10□□□□□ -0.81
LIMCH1-215ENST00000512632 FAM198AQ9UFP1 575 aa10□□□□□ -0.81
LIMCH1-215ENST00000512632 GAS7O60861 476 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 VIMP08670 466 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 CIITAP33076 1130 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 SCTRP47872 440 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 MAPK7Q13164 816 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 E2F5Q15329 346 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 ELAC2Q9BQ52 826 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 GGT7Q9UJ14 662 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 PRR12Q9ULL5 1215 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 EMSYQ7Z589 1322 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 CHUKO15111 745 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 RPL21P46778 160 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 ZYXQ15942 572 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 HHIPL2Q6UWX4 724 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 HOOK3Q86VS8 718 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 FUKQ8N0W3 1084 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 ZKSCAN4Q969J2 545 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 TLCD1Q96CP7 247 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 HVCN1Q96D96 273 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 FIZ1Q96SL8 496 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 IGLV3-22A0A075B6J6 115 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 SLC26A4O43511 780 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 COMTP21964 271 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 ECE1P42892 770 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 ERMARDQ5T6L9 678 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 TTC27Q6P3X3 843 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 CYB5D1Q6P9G0 228 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 ARHGEF19Q8IW93 802 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 ZSWIM2Q8NEG5 633 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 MGARPQ8TDB4 240 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 EPS8L3Q8TE67 593 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 NAP1L3Q99457 506 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 SYT11Q9BT88 431 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 GGA2Q9UJY4 613 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 SUGT1Q9Y2Z0 365 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 SRRM3A6NNA2 597 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 CCDC172P0C7W6 258 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 ARP10275 920 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 EIF3BP55884 814 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 BFSP1Q12934 665 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 TAX1BP1Q86VP1 789 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 CCDC105Q8IYK2 499 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 LRRC34Q8IZ02 419 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 RPUSD2Q8IZ73 545 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 POP1Q99575 1024 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 TDRD3Q9H7E2 651 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 DNAJC17Q9NVM6 304 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 ZBTB21Q9ULJ3 1066 aa9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 TTC7AQ9ULT0 858 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-215ENST00000512632 ANKRD63C9JTQ0 380 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 VCAM1P19320 739 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 PPP3CAQ08209 521 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 NSMFQ6X4W1 530 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 TMEM179Q6ZVK1 233 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 MYCBPQ99417 103 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 TXLNGYQ9BZA5 131 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 ACTR5Q9H9F9 607 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 MLXIPLQ9NP71 852 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 INTS9Q9NV88 658 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 NCANO14594 1321 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 ARHGEF35A5YM69 484 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 CCDC169A6NNP5 214 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 EIF3DO15371 548 aaKnown RBP eCLIP9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 PYGMP11217 842 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 LRRC14Q15048 493 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 CCDC137Q6PK04 289 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 OTUD6AQ7L8S5 288 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms