RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ZNF318Q5VUA4 2279 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 TECTAO75443 2155 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 A0A087WZ62 844 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 MAFO75444 373 aaPredicted RBP23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 AVPR2P30518 371 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 UGCGQ16739 394 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 OTUD6AQ7L8S5 288 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 DAGLBQ8NCG7 672 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 KREMEN2Q8NCW0 462 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 CNNM3Q8NE01 707 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 TCP11Q8WWU5 503 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 ZNF274Q96GC6 653 aaPredicted RBP23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 FAM20AQ96MK3 541 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 FDXACB1Q9BRP7 624 aaPredicted RBP23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 UBN1Q9NPG3 1134 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 USTQ9Y2C2 406 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 INPP5FQ9Y2H2 1132 aa23.57■■□□□ 1.36
SQSTM1-210ENST00000506042 CLASP2O75122 1294 aaKnown RBP23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 ZNF623O75123 536 aa23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 NR1I2O75469 434 aa23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 CTSAP10619 480 aa23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 FGFR4P22455 802 aa23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 RFC5P40937 340 aa23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 QARSP47897 775 aaKnown RBP23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 PCBP1Q15365 356 aaKnown RBP eCLIP23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 KIAA1841Q6NSI8 718 aa23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 HACE1Q8IYU2 909 aa23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 PRSS33Q8NF86 280 aa23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 PSPC1Q8WXF1 523 aaKnown RBP23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 ATOH1Q92858 354 aaPredicted RBP23.56■■□□□ 1.36
SQSTM1-210ENST00000506042 IGKV6-21A0A0C4DH24 114 aa23.55■■□□□ 1.36
SQSTM1-210ENST00000506042 SP100P23497 879 aaPredicted RBP23.55■■□□□ 1.36
SQSTM1-210ENST00000506042 RARS2Q5T160 578 aaKnown RBP23.55■■□□□ 1.36
SQSTM1-210ENST00000506042 SRGAP1Q7Z6B7 1085 aa23.55■■□□□ 1.36
SQSTM1-210ENST00000506042 ASIC4Q96FT7 647 aa23.55■■□□□ 1.36
SQSTM1-210ENST00000506042 IGSF21Q96ID5 467 aa23.55■■□□□ 1.36
SQSTM1-210ENST00000506042 ZBP1Q9H171 429 aa23.55■■□□□ 1.36
SQSTM1-210ENST00000506042 SFXN1Q9H9B4 322 aa23.55■■□□□ 1.36
SQSTM1-210ENST00000506042 NCOA5Q9HCD5 579 aaKnown RBP23.55■■□□□ 1.36
SQSTM1-210ENST00000506042 COL4A3BPQ9Y5P4 624 aa23.55■■□□□ 1.36
SQSTM1-210ENST00000506042 NT5C1B-RDH14C9J2C7 533 aa23.54■■□□□ 1.36
SQSTM1-210ENST00000506042 ASAP2O43150 1006 aa23.54■■□□□ 1.36
SQSTM1-210ENST00000506042 ERLIN2O94905 339 aa23.54■■□□□ 1.36
SQSTM1-210ENST00000506042 BAG4O95429 457 aaKnown RBP23.54■■□□□ 1.36
SQSTM1-210ENST00000506042 ZDHHC14Q8IZN3 488 aa23.54■■□□□ 1.36
SQSTM1-210ENST00000506042 CCDC43Q96MW1 224 aaKnown RBP23.54■■□□□ 1.36
SQSTM1-210ENST00000506042 GBP3Q9H0R5 595 aa23.54■■□□□ 1.36
SQSTM1-210ENST00000506042 POMKQ9H5K3 350 aa23.54■■□□□ 1.36
SQSTM1-210ENST00000506042 CYP26B1Q9NR63 512 aa23.54■■□□□ 1.36
SQSTM1-210ENST00000506042 TBC1D13Q9NVG8 400 aa23.54■■□□□ 1.36
SQSTM1-210ENST00000506042 TDP2O95551 362 aa23.53■■□□□ 1.36
SQSTM1-210ENST00000506042 ALDH2P05091 517 aa23.53■■□□□ 1.36
SQSTM1-210ENST00000506042 P4HBP07237 508 aaKnown RBP23.53■■□□□ 1.36
SQSTM1-210ENST00000506042 LETM2Q2VYF4 491 aa23.53■■□□□ 1.36
SQSTM1-210ENST00000506042 OTOP3Q7RTS5 596 aa23.53■■□□□ 1.36
SQSTM1-210ENST00000506042 CEP170P1Q96L14 293 aa23.53■■□□□ 1.36
SQSTM1-210ENST00000506042 TMEM175Q9BSA9 504 aa23.53■■□□□ 1.36
SQSTM1-210ENST00000506042 BRMS1Q9HCU9 246 aa23.53■■□□□ 1.36
SQSTM1-210ENST00000506042 MRPL17Q9NRX2 175 aaKnown RBP23.53■■□□□ 1.36
SQSTM1-210ENST00000506042 AGPAT5Q9NUQ2 364 aa23.53■■□□□ 1.36
SQSTM1-210ENST00000506042 KMT2EQ8IZD2 1858 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 TBX3O15119 743 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 CSDE1O75534 798 aaKnown RBP23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 KLRC2P26717 231 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 PPP2R5CQ13362 524 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 IER5LQ5T953 404 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 CCDC149Q6ZUS6 474 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 NEK8Q86SG6 692 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 WASF1Q92558 559 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 TM6SF1Q9BZW5 370 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 RSAD1Q9HA92 442 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 ZSWIM6Q9HCJ5 1215 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 FAN1Q9Y2M0 1017 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 PCDHB2Q9Y5E7 798 aa23.52■■□□□ 1.36
SQSTM1-210ENST00000506042 URODP06132 367 aa23.51■■□□□ 1.35
SQSTM1-210ENST00000506042 GALTP07902 379 aa23.51■■□□□ 1.35
SQSTM1-210ENST00000506042 TFDP1Q14186 410 aa23.51■■□□□ 1.35
SQSTM1-210ENST00000506042 PPP4R3AQ6IN85 833 aa23.51■■□□□ 1.35
SQSTM1-210ENST00000506042 SLFN12Q8IYM2 578 aa23.51■■□□□ 1.35
SQSTM1-210ENST00000506042 ETNPPLQ8TBG4 499 aa23.51■■□□□ 1.35
SQSTM1-210ENST00000506042 MBOAT7Q96N66 472 aa23.51■■□□□ 1.35
SQSTM1-210ENST00000506042 NRDE2Q9H7Z3 1164 aa23.51■■□□□ 1.35
SQSTM1-210ENST00000506042 C2CD4DB7Z1M9 353 aa23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 ADAMTS3O15072 1205 aa23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 GFRA3O60609 400 aa23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 AXLP30530 894 aa23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 DRP2Q13474 957 aa23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 MXD4Q14582 209 aaPredicted RBP23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 INF2Q27J81 1249 aa23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 CYP26C1Q6V0L0 522 aa23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 ANO5Q75V66 913 aa23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 STAMQ92783 540 aa23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 LPPQ93052 612 aa23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 CCDC51Q96ER9 411 aa23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 C5orf42Q9H799 3197 aa23.5■■□□□ 1.35
SQSTM1-210ENST00000506042 GALR2O43603 387 aaPredicted RBP23.49■■□□□ 1.35
SQSTM1-210ENST00000506042 OFD1O75665 1012 aa23.49■■□□□ 1.35
SQSTM1-210ENST00000506042 ADH1AP07327 375 aa23.49■■□□□ 1.35
SQSTM1-210ENST00000506042 TCF15Q12870 199 aa23.49■■□□□ 1.35
SQSTM1-210ENST00000506042 B3GNT9Q6UX72 402 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms