RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PDCD2LQ9BRP1 358 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 RPAP3Q9H6T3 665 aaPredicted RBP13.01□□□□□ -0.33
NUP54-202ENST00000502850 PICK1Q9NRD5 415 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 CREBZFQ9NS37 354 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 RBM12Q9NTZ6 932 aaKnown RBP13.01□□□□□ -0.33
NUP54-202ENST00000502850 LOC285556D6RIA3 1793 aa13□□□□□ -0.33
NUP54-202ENST00000502850 PFASO15067 1338 aa13□□□□□ -0.33
NUP54-202ENST00000502850 PASKQ96RG2 1323 aa13□□□□□ -0.33
NUP54-202ENST00000502850 H0YCG3 227 aa13□□□□□ -0.33
NUP54-202ENST00000502850 PGRMC1O00264 195 aaKnown RBP13□□□□□ -0.33
NUP54-202ENST00000502850 DDX3XO00571 662 aaKnown RBP eCLIP13□□□□□ -0.333e-11■■□□□ 12
NUP54-202ENST00000502850 OPA1O60313 960 aa13□□□□□ -0.33
NUP54-202ENST00000502850 EIF2AK2P19525 551 aaKnown RBP13□□□□□ -0.33
NUP54-202ENST00000502850 MATR3P43243 847 aaKnown RBP eCLIP13□□□□□ -0.331e-9■■■■□ 19.8
NUP54-202ENST00000502850 VAMP7P51809 220 aa13□□□□□ -0.33
NUP54-202ENST00000502850 MTMR2Q13614 643 aa13□□□□□ -0.33
NUP54-202ENST00000502850 COG2Q14746 738 aa13□□□□□ -0.33
NUP54-202ENST00000502850 KIF22Q14807 665 aa13□□□□□ -0.33
NUP54-202ENST00000502850 PPP2R5EQ16537 467 aa13□□□□□ -0.33
NUP54-202ENST00000502850 PEX26Q7Z412 305 aa13□□□□□ -0.33
NUP54-202ENST00000502850 APOBEC3FQ8IUX4 373 aaKnown RBP13□□□□□ -0.33
NUP54-202ENST00000502850 USP38Q8NB14 1042 aa13□□□□□ -0.33
NUP54-202ENST00000502850 SLC30A5Q8TAD4 765 aa13□□□□□ -0.33
NUP54-202ENST00000502850 U2AF1L4Q8WU68 220 aaKnown RBP13□□□□□ -0.33
NUP54-202ENST00000502850 ATP6V0A1Q93050 837 aa13□□□□□ -0.33
NUP54-202ENST00000502850 C12orf42Q96LP6 360 aa13□□□□□ -0.33
NUP54-202ENST00000502850 RUFY1Q96T51 708 aa13□□□□□ -0.33
NUP54-202ENST00000502850 PKD2L1Q9P0L9 805 aa13□□□□□ -0.33
NUP54-202ENST00000502850 USP20Q9Y2K6 914 aa13□□□□□ -0.33
NUP54-202ENST00000502850 FAN1Q9Y2M0 1017 aa13□□□□□ -0.33
NUP54-202ENST00000502850 ASTN2O75129 1339 aaPredicted RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 C19orf81C9J6K1 198 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 GOLGA8KD6RF30 607 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 VWA5AO00534 786 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 KCNK3O14649 394 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 TRIM49P0CI25 452 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 TRIM49CP0CI26 452 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 TNFAIP3P21580 790 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 BACE1P56817 501 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 MCCD1P59942 119 aaPredicted RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 DMP1Q13316 513 aaPredicted RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 CBWD6Q4V339 395 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 MUM1L1Q5H9M0 696 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 CBWD3Q5JTY5 395 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 CBWD5Q5RIA9 395 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 SLC30A10Q6XR72 485 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 LEKR1Q6ZMV7 388 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 SND1Q7KZF4 910 aaKnown RBP eCLIP12.99□□□□□ -0.33
NUP54-202ENST00000502850 HAUS6Q7Z4H7 955 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 WHAMMQ8TF30 809 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 KIFAP3Q92845 792 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 TAAR1Q96RJ0 339 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 NAP1L3Q99457 506 aaPredicted RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 ZCCHC17Q9NP64 241 aaKnown RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 GDF3Q9NR23 364 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 HOMER2Q9NSB8 354 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 RNF146Q9NTX7 359 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 CWC15Q9P013 229 aaKnown RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 WDR81Q562E7 1941 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 MYPNQ86TC9 1320 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 COL11A1P12107 1806 aaPredicted RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 HSF2BPO75031 334 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 RNF40O75150 1001 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 HEXIM1O94992 359 aaKnown RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 MYCLP12524 364 aaPredicted RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 MAP1SQ66K74 1059 aaPredicted RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 RHOT2Q8IXI1 618 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 MICALL2Q8IY33 904 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 ZNF280CQ8ND82 737 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 MCPH1Q8NEM0 835 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 AFAP1L1Q8TED9 768 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 SPIRE2Q8WWL2 714 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 FAM81BQ96LP2 452 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.99□□□□□ -0.333e-9■□□□□ 10
NUP54-202ENST00000502850 MOV10L1Q9BXT6 1211 aaKnown RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 POLD4Q9HCU8 107 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 HSPBP1Q9NZL4 362 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 DMGDHQ9UI17 866 aaKnown RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 ZNF112Q9UJU3 913 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 TMEM59LQ9UK28 342 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 AJAP1Q9UKB5 411 aaPredicted RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 AMFRQ9UKV5 643 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 ZHX1Q9UKY1 873 aaPredicted RBP12.99□□□□□ -0.33
NUP54-202ENST00000502850 PCDHA10Q9Y5I2 948 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 PPP2R3BQ9Y5P8 575 aa12.99□□□□□ -0.33
NUP54-202ENST00000502850 NFASCO94856 1347 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 EMSYQ7Z589 1322 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 TESPA1A2RU30 521 aaPredicted RBP12.98□□□□□ -0.33
NUP54-202ENST00000502850 ANKRD62A6NC57 917 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 ATP2A1O14983 1001 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 ZMYND10O75800 440 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 LMAN1P49257 510 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 MXI1P50539 228 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 GALCP54803 685 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 HADHBP55084 474 aaKnown RBP12.98□□□□□ -0.33
NUP54-202ENST00000502850 RTP1P59025 263 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 PPFIA1Q13136 1202 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 CUL1Q13616 776 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 TCEAL1Q15170 157 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 XKR9Q5GH70 373 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms