RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 R3HDMLQ9H3Y0 253 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 BCAS3Q9H6U6 928 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 SUGCTQ9HAC7 445 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 SAGE1Q9NXZ1 904 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 ARHGAP28Q9P2N2 729 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 SUCLA2Q9P2R7 463 aaPredicted RBP9.24□□□□□ -0.93
SF3A1-210ENST00000498259 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.24□□□□□ -0.93
SF3A1-210ENST00000498259 ZNFX1Q9P2E3 1918 aaKnown RBP9.24□□□□□ -0.93
SF3A1-210ENST00000498259 IGKV6-21A0A0C4DH24 114 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 TMEM150BA6NC51 233 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 TEX33O43247 280 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 ADCY3O60266 1144 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 MSCO60682 206 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 MYCNP04198 464 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-210ENST00000498259 ZNF865P0CJ78 1059 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-210ENST00000498259 RARBP10826 455 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 INSRRP14616 1297 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 RFX1P22670 979 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 HOXD13P35453 343 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 PBX1P40424 430 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 PHKA2P46019 1235 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 ZBED6P86452 979 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 KCNH2Q12809 1159 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 PPFIA1Q13136 1202 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 DCAF17Q5H9S7 520 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-210ENST00000498259 EFCAB12Q6NXP0 572 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 GBP6Q6ZN66 633 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 ZNF784Q8NCA9 323 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-210ENST00000498259 GLIS3Q8NEA6 775 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 OR8K1Q8NGG5 319 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 PRPF31Q8WWY3 499 aaKnown RBP9.23□□□□□ -0.93
SF3A1-210ENST00000498259 POMGNT1Q8WZA1 660 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 COPS5Q92905 334 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 TMEM143Q96AN5 459 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 SH2D3AQ9BRG2 576 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 MRPL4Q9BYD3 311 aaKnown RBP9.23□□□□□ -0.93
SF3A1-210ENST00000498259 INO80BQ9C086 356 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-210ENST00000498259 GPRC5CQ9NQ84 441 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 XPNPEP1Q9NQW7 623 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 PRMT7Q9NVM4 692 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-210ENST00000498259 DMAC2Q9NW81 257 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 CAPN11Q9UMQ6 739 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 GNEQ9Y223 722 aaKnown RBP9.23□□□□□ -0.93
SF3A1-210ENST00000498259 LCTP09848 1927 aa9.23□□□□□ -0.93
SF3A1-210ENST00000498259 PLXNA1Q9UIW2 1896 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 ZNF233A6NK53 670 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 KIF2AO00139 706 aaPredicted RBP9.22□□□□□ -0.93
SF3A1-210ENST00000498259 CLIC2O15247 247 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 SEPT4O43236 478 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 ZNF500O60304 480 aaPredicted RBP9.22□□□□□ -0.93
SF3A1-210ENST00000498259 AKAP3O75969 853 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 PIGRP01833 764 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 GLRA2P23416 452 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 KLRC1P26715 233 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 GTF2H1P32780 548 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 CYP2C19P33261 490 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 KRT9P35527 623 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 MATR3P43243 847 aaKnown RBP eCLIP9.22□□□□□ -0.93
SF3A1-210ENST00000498259 FLT3LGP49771 235 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 CYP2J2P51589 502 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 AP3M2P53677 418 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 LAMTOR4Q0VGL1 99 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 BFSP1Q12934 665 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 SYCP1Q15431 976 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 SURF1Q15526 300 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 FSCN1Q16658 493 aaKnown RBP9.22□□□□□ -0.93
SF3A1-210ENST00000498259 EXOC3L4Q17RC7 722 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 TMEM132AQ24JP5 1023 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 MIIPQ5JXC2 388 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 CYP26C1Q6V0L0 522 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 ZNF410Q86VK4 478 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 RHPN2Q8IUC4 686 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 NME8Q8N427 588 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 RAET1EQ8TD07 263 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 PXYLP1Q8TE99 480 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 CACTINQ8WUQ7 758 aaKnown RBP9.22□□□□□ -0.93
SF3A1-210ENST00000498259 EEF2KMTQ96G04 330 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 PRIMPOLQ96LW4 560 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 C16orf70Q9BSU1 422 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 TCHPQ9BT92 498 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 FGFBP2Q9BYJ0 223 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 MMRN2Q9H8L6 949 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 POLD4Q9HCU8 107 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 LUC7LQ9NQ29 371 aaKnown RBP9.22□□□□□ -0.93
SF3A1-210ENST00000498259 INTS13Q9NVM9 706 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 HSPBP1Q9NZL4 362 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 MYO6Q9UM54 1294 aa9.22□□□□□ -0.93
SF3A1-210ENST00000498259 MYH9P35579 1960 aaKnown RBP9.22□□□□□ -0.93
SF3A1-210ENST00000498259 PMM2O15305 246 aa9.21□□□□□ -0.94
SF3A1-210ENST00000498259 CLDN3O15551 220 aa9.21□□□□□ -0.94
SF3A1-210ENST00000498259 EXTL3O43909 919 aa9.21□□□□□ -0.94
SF3A1-210ENST00000498259 AOC2O75106 756 aa9.21□□□□□ -0.94
SF3A1-210ENST00000498259 MFAP3LO75121 409 aa9.21□□□□□ -0.94
SF3A1-210ENST00000498259 TOM1L1O75674 476 aa9.21□□□□□ -0.94
SF3A1-210ENST00000498259 TRPA1O75762 1119 aa9.21□□□□□ -0.94
SF3A1-210ENST00000498259 F2P00734 622 aa9.21□□□□□ -0.94
SF3A1-210ENST00000498259 SRGAP2CP0DJJ0 459 aa9.21□□□□□ -0.94
SF3A1-210ENST00000498259 CASP14P31944 242 aa9.21□□□□□ -0.94
SF3A1-210ENST00000498259 VAMP7P51809 220 aa9.21□□□□□ -0.94
SF3A1-210ENST00000498259 POU5F1Q01860 360 aaKnown RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms