RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 MVPQ14764 893 aaKnown RBP5.92□□□□□ -1.46
CSMD3-208ENST00000497026 CBX2Q14781 532 aaPredicted RBP5.92□□□□□ -1.46
CSMD3-208ENST00000497026 ATP2B3Q16720 1220 aa5.92□□□□□ -1.46
CSMD3-208ENST00000497026 MFSD14BQ5SR56 506 aa5.92□□□□□ -1.46
CSMD3-208ENST00000497026 CEP85Q6P2H3 762 aa5.92□□□□□ -1.46
CSMD3-208ENST00000497026 ZC3H14Q6PJT7 736 aaKnown RBP5.92□□□□□ -1.46
CSMD3-208ENST00000497026 KRT26Q7Z3Y9 468 aa5.92□□□□□ -1.46
CSMD3-208ENST00000497026 ZCCHC4Q9H5U6 513 aa5.92□□□□□ -1.46
CSMD3-208ENST00000497026 BCAS3Q9H6U6 928 aa5.92□□□□□ -1.46
CSMD3-208ENST00000497026 PDLIM7Q9NR12 457 aa5.92□□□□□ -1.46
CSMD3-208ENST00000497026 RWDD3Q9Y3V2 267 aa5.92□□□□□ -1.46
CSMD3-208ENST00000497026 SSC5DA1L4H1 1573 aa5.92□□□□□ -1.46
CSMD3-208ENST00000497026 OTOFQ9HC10 1997 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 A0A1B0GUL7 405 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 C2orf71A6NGG8 1288 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 F8W031 263 aaPredicted RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 BUB1BO60566 1050 aaPredicted RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 CELF2O95319 508 aaKnown RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 IFIT1P09914 478 aaKnown RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 SLC5A1P13866 664 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 HOXA5P20719 270 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 PHKA1P46020 1223 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 LIMS1P48059 325 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 SEPHS1P49903 392 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 AFF3P51826 1226 aaKnown RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 ATP8B2P98198 1209 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 AMPD2Q01433 879 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 TMEM62Q0P6H9 643 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 TFCP2Q12800 502 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 CHAF1AQ13111 956 aaPredicted RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 CAVIN4Q5BKX8 364 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 CNKSR3Q6P9H4 555 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 SAPCD2Q86UD0 394 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 PPP1R14AQ96A00 147 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 DACT3Q96B18 629 aaPredicted RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 SEC16BQ96JE7 1060 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 PRMT6Q96LA8 375 aaPredicted RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 RRAGDQ9NQL2 400 aaPredicted RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 ZBTB40Q9NUA8 1239 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 FBLN5Q9UBX5 448 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 AKT3Q9Y243 479 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 PCDHA5Q9Y5H7 936 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 MYO5AQ9Y4I1 1855 aaKnown RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 LAMB1P07942 1786 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 MYH2Q9UKX2 1941 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 MAST2Q6P0Q8 1798 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 TRIM13O60858 407 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 PPP1R11O60927 126 aaPredicted RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 KCNH1O95259 989 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 MAPKAPK2P49137 400 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 MMP14P50281 582 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 TIMM10P62072 90 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 CFAP100Q494V2 611 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 RCSD1Q6JBY9 416 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 MTERF4Q7Z6M4 381 aaKnown RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 FAM129CQ86XR2 697 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 VPS37DQ86XT2 251 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 ARHGEF39Q8N4T4 335 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 DCPSQ96C86 337 aaKnown RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 CDCA5Q96FF9 252 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 PWWP2AQ96N64 755 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 ZNF408Q9H9D4 720 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 PARD6AQ9NPB6 346 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 DBR1Q9UK59 544 aaKnown RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 HDAC9Q9UKV0 1011 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 ABT1Q9ULW3 272 aaKnown RBP5.91□□□□□ -1.46
CSMD3-208ENST00000497026 DDX19BQ9UMR2 479 aa5.91□□□□□ -1.46
CSMD3-208ENST00000497026 PCNTO95613 3336 aa5.9□□□□□ -1.46
CSMD3-208ENST00000497026 DOCK2Q92608 1830 aa5.9□□□□□ -1.46
CSMD3-208ENST00000497026 SALL1Q9NSC2 1324 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 CLRN2A0PK11 232 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 PRDX5P30044 214 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 PRR5P85299 388 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 RASGRF1Q13972 1273 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 NR1I3Q14994 352 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 DLGAP5Q15398 846 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 DEFB115Q30KQ5 88 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 PRAMEF18Q5VWM3 479 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 EEF1DP3Q658K8 133 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 CYP4F22Q6NT55 531 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 PAQR3Q6TCH7 311 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 ZNF513Q8N8E2 541 aaPredicted RBP5.9□□□□□ -1.47
CSMD3-208ENST00000497026 TBC1D22AQ8WUA7 517 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 GBA2Q9HCG7 927 aaPredicted RBP5.9□□□□□ -1.47
CSMD3-208ENST00000497026 GPRC5CQ9NQ84 441 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 GULP1Q9UBP9 304 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 ISY1Q9ULR0 285 aaKnown RBP5.9□□□□□ -1.47
CSMD3-208ENST00000497026 BACE2Q9Y5Z0 518 aa5.9□□□□□ -1.47
CSMD3-208ENST00000497026 CDK5RAP2Q96SN8 1893 aa5.89□□□□□ -1.47
CSMD3-208ENST00000497026 PDS5AQ29RF7 1337 aaKnown RBP5.89□□□□□ -1.47
CSMD3-208ENST00000497026 WDR33Q9C0J8 1336 aaKnown RBP5.89□□□□□ -1.47
CSMD3-208ENST00000497026 ANKRD34BA5PLL1 514 aa5.89□□□□□ -1.47
CSMD3-208ENST00000497026 SMAD7O15105 426 aaKnown RBP5.89□□□□□ -1.47
CSMD3-208ENST00000497026 FRAT2O75474 233 aaPredicted RBP5.89□□□□□ -1.47
CSMD3-208ENST00000497026 SURF6O75683 361 aaKnown RBP5.89□□□□□ -1.47
CSMD3-208ENST00000497026 CYBBP04839 570 aa5.89□□□□□ -1.47
CSMD3-208ENST00000497026 HSPA1AP0DMV8 641 aaKnown RBP5.89□□□□□ -1.47
CSMD3-208ENST00000497026 HSPA1BP0DMV9 641 aaKnown RBP5.89□□□□□ -1.47
CSMD3-208ENST00000497026 ATF4P18848 351 aaPredicted RBP5.89□□□□□ -1.47
CSMD3-208ENST00000497026 ERCC5P28715 1186 aaPredicted RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms