RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 PPP1R9AQ9ULJ8 1098 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 IGSF9BQ9UPX0 1349 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 BACH1O14867 736 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 SART1O43290 800 aaKnown RBP12.15□□□□□ -0.46
CHMP3-209ENST00000494623 KRT14P02533 472 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 IVLP07476 585 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 TMEM253P0C7T8 217 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 ZBTB48P10074 688 aaPredicted RBP12.15□□□□□ -0.46
CHMP3-209ENST00000494623 NPEPPSP55786 919 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 ERVK-9P63128 1117 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 CETN1Q12798 172 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 TTMPQ5BVD1 217 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 FAM102BQ5T8I3 360 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 KCTD16Q68DU8 428 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 CIAPIN1Q6FI81 312 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 NSMFQ6X4W1 530 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 NIPA1Q7RTP0 329 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 ARHGEF19Q8IW93 802 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 ARHGEF26Q96DR7 871 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 RMDN3Q96TC7 470 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 HSPBP1Q9NZL4 362 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 TCEAL9Q9UHQ7 104 aa12.15□□□□□ -0.46
CHMP3-209ENST00000494623 DBR1Q9UK59 544 aaKnown RBP12.15□□□□□ -0.46
CHMP3-209ENST00000494623 TESPA1A2RU30 521 aaPredicted RBP12.15□□□□□ -0.47
CHMP3-209ENST00000494623 PRPF4BQ13523 1007 aaKnown RBP12.15□□□□□ -0.47
CHMP3-209ENST00000494623 MYBPC2Q14324 1141 aa12.15□□□□□ -0.47
CHMP3-209ENST00000494623 PGM5Q15124 567 aa12.15□□□□□ -0.47
CHMP3-209ENST00000494623 XKR9Q5GH70 373 aa12.15□□□□□ -0.47
CHMP3-209ENST00000494623 PLA2G4FQ68DD2 849 aa12.15□□□□□ -0.47
CHMP3-209ENST00000494623 TTC19Q6DKK2 380 aaPredicted RBP12.15□□□□□ -0.47
CHMP3-209ENST00000494623 XXYLT1Q8NBI6 393 aa12.15□□□□□ -0.47
CHMP3-209ENST00000494623 SLC20A1Q8WUM9 679 aa12.15□□□□□ -0.47
CHMP3-209ENST00000494623 LPAR1Q92633 364 aa12.15□□□□□ -0.47
CHMP3-209ENST00000494623 HES6Q96HZ4 224 aa12.15□□□□□ -0.47
CHMP3-209ENST00000494623 AGPAT1Q99943 283 aa12.15□□□□□ -0.47
CHMP3-209ENST00000494623 SYT11Q9BT88 431 aa12.15□□□□□ -0.47
CHMP3-209ENST00000494623 TBC1D22BQ9NU19 505 aa12.15□□□□□ -0.47
CHMP3-209ENST00000494623 CCDC169A6NNP5 214 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 RPS6KA5O75582 802 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 MTMR2Q13614 643 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 ARHGEF16Q5VV41 709 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 NAA35Q5VZE5 725 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 RNF207Q6ZRF8 634 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 IQCKQ8N0W5 287 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 RFFLQ8WZ73 363 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 KIAA1683Q9H0B3 1180 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 TAF1DQ9H5J8 278 aaPredicted RBP12.14□□□□□ -0.47
CHMP3-209ENST00000494623 AMACRQ9UHK6 382 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 RSPH14Q9UHP6 348 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 MAPTP10636 758 aaKnown RBP12.14□□□□□ -0.47
CHMP3-209ENST00000494623 ADAT2Q7Z6V5 191 aaKnown RBP12.14□□□□□ -0.47
CHMP3-209ENST00000494623 PLEKHO2Q8TD55 490 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 KAT5Q92993 513 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 TEPSINQ96N21 525 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 ISCUQ9H1K1 167 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 RABEP2Q9H5N1 569 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 MYH11P35749 1972 aa12.14□□□□□ -0.47
CHMP3-209ENST00000494623 ASTN2O75129 1339 aaPredicted RBP12.13□□□□□ -0.47
CHMP3-209ENST00000494623 ZBED4O75132 1171 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 FGGP02679 453 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 VCAM1P19320 739 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 GTF2BQ00403 316 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 PPATQ06203 517 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 ALCAMQ13740 583 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 KIF22Q14807 665 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 C1orf220Q5T0J3 134 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 RASGEF1CQ8N431 466 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 SH2D3CQ8N5H7 860 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 WHAMMQ8TF30 809 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 JDP2Q8WYK2 163 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 PIK3R5Q8WYR1 880 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 CCDC127Q96BQ5 260 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 CALR3Q96L12 384 aaKnown RBP12.13□□□□□ -0.47
CHMP3-209ENST00000494623 KIFC3Q9BVG8 833 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 RPAP3Q9H6T3 665 aaPredicted RBP12.13□□□□□ -0.47
CHMP3-209ENST00000494623 RBBP6Q7Z6E9 1792 aaKnown RBP12.13□□□□□ -0.47
CHMP3-209ENST00000494623 ANKRD62A6NC57 917 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 ZNF233A6NK53 670 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 CCNE2O96020 404 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 FTLP02792 175 aaPredicted RBP12.13□□□□□ -0.47
CHMP3-209ENST00000494623 IRAK1P51617 712 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 PSMC5P62195 406 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 ZNF746Q6NUN9 644 aaPredicted RBP12.13□□□□□ -0.47
CHMP3-209ENST00000494623 FMNL3Q8IVF7 1028 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 RPUSD2Q8IZ73 545 aaKnown RBP12.13□□□□□ -0.47
CHMP3-209ENST00000494623 WNK4Q96J92 1243 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 PDCD2LQ9BRP1 358 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 CAPS2Q9BXY5 557 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 VPS33BQ9H267 617 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 CHORDC1Q9UHD1 332 aaPredicted RBP12.13□□□□□ -0.47
CHMP3-209ENST00000494623 LCMT1Q9UIC8 334 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 COG5Q9UP83 839 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 KIF13BQ9NQT8 1826 aa12.13□□□□□ -0.47
CHMP3-209ENST00000494623 NCANO14594 1321 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 ATP8B3O60423 1300 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 CCDC188H7C350 402 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 LYPLA2O95372 231 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 MAP2K1Q02750 393 aaPredicted RBP12.12□□□□□ -0.47
CHMP3-209ENST00000494623 ZNF211Q13398 564 aaPredicted RBP12.12□□□□□ -0.47
CHMP3-209ENST00000494623 C4orf19Q8IY42 314 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms