RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 FAM133BQ5BKY9 247 aaKnown RBP13.97□□□□□ -0.17
COL6A3-212ENST00000491769 PKN3Q6P5Z2 889 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 PCDHB7Q9Y5E2 793 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 CCDC195A0A1B0GUA6 201 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 CCDC151A5D8V7 595 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 CAPN15O75808 1086 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 CCNE1P24864 410 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 SMARCA1P28370 1054 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 LIG3P49916 1009 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 TMPRSS15P98073 1019 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 LRRC8AQ8IWT6 810 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 SAAL1Q96ER3 474 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 OTUB1Q96FW1 271 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-212ENST00000491769 RBM41Q96IZ5 413 aaKnown RBP13.97□□□□□ -0.17
COL6A3-212ENST00000491769 LSG1Q9H089 658 aaKnown RBP13.97□□□□□ -0.17
COL6A3-212ENST00000491769 COL15A1P39059 1388 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 KCNA2P16389 499 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 ARL4CP56559 192 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 NAF1Q96HR8 494 aaKnown RBP13.97□□□□□ -0.17
COL6A3-212ENST00000491769 ZNF512Q96ME7 567 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-212ENST00000491769 SEL1LQ9UBV2 794 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 GNA15P30679 374 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 CDK17Q00537 523 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 HSP90AA5PQ58FG0 334 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 MFSD4BQ5TF39 518 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 ITPRIPL1Q6GPH6 555 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 ACAD11Q709F0 780 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 NRBF2Q96F24 287 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 KRT37O76014 449 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 QARSP47897 775 aaKnown RBP13.97□□□□□ -0.17
COL6A3-212ENST00000491769 DACH2Q96NX9 599 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 LRRC37BQ96QE4 947 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 ASPSCR1Q9BZE9 553 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 TMEM63CQ9P1W3 806 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 PTPRKQ15262 1439 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 KPNA7A9QM74 516 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 SLFN14P0C7P3 912 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 SREBF2Q12772 1141 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 DDIASQ8IXT1 998 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 FOPNLQ96NB1 174 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 TRPV6Q9H1D0 765 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 NDST4Q9H3R1 872 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 ATG3Q9NT62 314 aa13.97□□□□□ -0.17
COL6A3-212ENST00000491769 IPO5O00410 1097 aaKnown RBP13.96□□□□□ -0.17
COL6A3-212ENST00000491769 ARHGEF7Q14155 803 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 MGAT5BQ3V5L5 792 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 FAM102AQ5T9C2 384 aaPredicted RBP13.96□□□□□ -0.17
COL6A3-212ENST00000491769 MINPP1Q9UNW1 487 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 C2CD2LO14523 706 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 SULT1E1P49888 294 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 KIF23Q02241 960 aaPredicted RBP13.96□□□□□ -0.17
COL6A3-212ENST00000491769 NAALADL2Q58DX5 795 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 MAP4K1Q92918 833 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 PAGE5Q96GU1 130 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 KDM4CQ9H3R0 1056 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 PLEKHA5Q9HAU0 1116 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 PSMC5P62195 406 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 RNF149Q8NC42 400 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 NSUN7Q8NE18 718 aaKnown RBP13.96□□□□□ -0.17
COL6A3-212ENST00000491769 CYP26B1Q9NR63 512 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 ZSCAN32Q9NX65 697 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 SLC9A2Q9UBY0 812 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 NLRP1Q9C000 1473 aa13.96□□□□□ -0.17
COL6A3-212ENST00000491769 P4HBP07237 508 aaKnown RBP13.96□□□□□ -0.18
COL6A3-212ENST00000491769 ESRRAP11474 423 aaPredicted RBP13.96□□□□□ -0.18
COL6A3-212ENST00000491769 OR1G1P47890 313 aa13.96□□□□□ -0.18
COL6A3-212ENST00000491769 PPP3CCP48454 512 aa13.96□□□□□ -0.18
COL6A3-212ENST00000491769 TTLL11Q8NHH1 800 aa13.96□□□□□ -0.18
COL6A3-212ENST00000491769 THOC1Q96FV9 657 aaKnown RBP13.96□□□□□ -0.18
COL6A3-212ENST00000491769 TMEM260Q9NX78 707 aa13.96□□□□□ -0.18
COL6A3-212ENST00000491769 SYCE1LA8MT33 242 aa13.96□□□□□ -0.18
COL6A3-212ENST00000491769 KRT17Q04695 432 aa13.96□□□□□ -0.18
COL6A3-212ENST00000491769 RNF25Q96BH1 459 aaPredicted RBP13.96□□□□□ -0.18
COL6A3-212ENST00000491769 E9PMD0 336 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 DDX5P17844 614 aaKnown RBP13.95□□□□□ -0.18
COL6A3-212ENST00000491769 TBXAS1P24557 533 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-212ENST00000491769 ARHGAP15Q53QZ3 475 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 TRIM48Q8IWZ4 208 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 SLC44A5Q8NCS7 719 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 ZNF507Q8TCN5 953 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 TMEM47Q9BQJ4 181 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 ZNF263O14978 683 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 LRRC63Q05C16 580 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 SNX17Q15036 470 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 IL31Q6EBC2 164 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 PPHLN1Q8NEY8 458 aaKnown RBP13.95□□□□□ -0.18
COL6A3-212ENST00000491769 FAM135BQ49AJ0 1406 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 RPS6KA5O75582 802 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 EPHB4P54760 987 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 ZNF445P59923 1031 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 AARS2Q5JTZ9 985 aaKnown RBP13.95□□□□□ -0.18
COL6A3-212ENST00000491769 IER5Q5VY09 327 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 RASEFQ8IZ41 740 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 ZMYND12Q9H0C1 365 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 RBAKQ9NYW8 714 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-212ENST00000491769 TTC7AQ9ULT0 858 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-212ENST00000491769 UTYO14607 1347 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 A0A1W2PQ27 194 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 A0A1W2PQ64 194 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 A0A1W2PQD8 194 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms