RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 KCND2Q9NZV8 630 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 PCDHB7Q9Y5E2 793 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 KRT85P78386 507 aa18.01■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 TAP1Q03518 808 aa18.01■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 MCM6Q14566 821 aa18.01■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 TWF2Q6IBS0 349 aaKnown RBP18.01■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 DEPTORQ8TB45 409 aa18.01■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 LARP4BQ92615 738 aaKnown RBP18.01■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 C2orf40Q9H1Z8 148 aa18.01■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 ELAC1Q9H777 363 aaKnown RBP18.01■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 RC3H2Q9HBD1 1191 aaKnown RBP18.01■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 POLD4Q9HCU8 107 aa18.01■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 TMEM161AQ9NX61 479 aa18.01■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 STK17AQ9UEE5 414 aa18.01■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 ADGRA3Q8IWK6 1321 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 LINC01553A4QN01 128 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 DGKIO75912 1065 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 NCLP19338 710 aaKnown RBP18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 AXLP30530 894 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 DDIT3P35638 169 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 NUCB2P80303 420 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 FAM189BP81408 668 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 RAD51AP2Q09MP3 1159 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 MAPK7Q13164 816 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 DHX8Q14562 1220 aaKnown RBP18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 RRAGBQ5VZM2 374 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 GPBP1Q86WP2 473 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 ECHDC2Q86YB7 292 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 DAW1Q8N136 415 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 ZNF689Q96CS4 500 aaPredicted RBP18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 RCOR1Q9UKL0 485 aa18■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 A0A0U1RQF3 1178 aa17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 TSPAN1O60635 241 aa17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 ANP32AP39687 249 aaKnown RBP17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 ME1P48163 572 aa17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 NCBP1Q09161 790 aaKnown RBP17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 DMP1Q13316 513 aaPredicted RBP17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 GRIN2CQ14957 1233 aa17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 AMHR2Q16671 573 aa17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 ARSHQ5FYA8 562 aa17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 CCDC73Q6ZRK6 1079 aa17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 GUCD1Q96NT3 240 aa17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 TRAIPQ9BWF2 469 aa17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 C17orf75Q9HAS0 396 aa17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 PRMT7Q9NVM4 692 aaPredicted RBP17.99■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 NPHP3-ACAD11A0A0J9YXS1 232 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 SKIP12755 728 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 HOXA11P31270 313 aaPredicted RBP17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 STAT6P42226 847 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 NPTX2P47972 431 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 RAB27AP51159 221 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 PEX3P56589 373 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 BTG3Q14201 252 aaPredicted RBP17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 AXDND1Q5T1B0 1012 aaPredicted RBP17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 NOTUMQ6P988 496 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 SHC4Q6S5L8 630 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 PPP4R3CPQ6ZMV5 832 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 CMTR2Q8IYT2 770 aaKnown RBP17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 FIBCD1Q8N539 461 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 CPB2Q96IY4 423 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 CHAMP1Q96JM3 812 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 PRIMPOLQ96LW4 560 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 TGS1Q96RS0 853 aaKnown RBP17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 KIFC3Q9BVG8 833 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 CERS4Q9HA82 394 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 FAM105AQ9NUU6 356 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 ODF2LQ9ULJ1 636 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 PCDHA7Q9UN72 937 aa17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 LAMA2P24043 3122 aaKnown RBP17.98■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 A0A087X0B3 334 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 CCDC169A6NNP5 214 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 HOXA2O43364 376 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 PRKCBP05771 671 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 FGFR1P11362 822 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 ATF7P17544 494 aaPredicted RBP17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 GATMP50440 423 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 EFNA5P52803 228 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 CACNB1Q02641 598 aaPredicted RBP17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 MAPK6Q16659 721 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 FAM187BQ17R55 369 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 PAN2Q504Q3 1202 aaKnown RBP17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 NAALADL2Q58DX5 795 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 SPRED2Q7Z698 418 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 ZNF598Q86UK7 904 aaKnown RBP17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 PDILTQ8N807 584 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 RNF169Q8NCN4 708 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 LEO1Q8WVC0 666 aaPredicted RBP17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 CCDC51Q96ER9 411 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 SPATA32Q96LK8 384 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 CDX2Q99626 313 aaPredicted RBP17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 REEP2Q9BRK0 252 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 CCDC113Q9H0I3 377 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 FZD8Q9H461 694 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 CNTNAP2Q9UHC6 1331 aa17.97■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 TBKBP1A7MCY6 615 aa17.96■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 SFI1A8K8P3 1242 aa17.96■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 B4GALT5O43286 388 aa17.96■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 EOMESO95936 686 aa17.96■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 KRT18P05783 430 aaKnown RBP17.96■□□□□ 0.47
MSH5-SAPCD1-206ENST00000491552 PLS3P13797 630 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms