RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LARSQ9P2J5 1176 aaKnown RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 MAFBQ9Y5Q3 323 aaPredicted RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 ZSWIM8A7E2V4 1837 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 IGKV6D-21A0A0A0MT36 114 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 LOC102724159A0A0B4J2E5 919 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 K7ENM7 598 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 NOP56O00567 594 aaKnown RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 DKC1O60832 514 aaKnown RBP eCLIP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 ALDH1A1P00352 501 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 SMPD1P17405 629 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 TRIM21P19474 475 aaKnown RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 MARK3P27448 753 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 IRX5P78411 483 aaPredicted RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 LACTBP83111 547 aaPredicted RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 ZBED6P86452 979 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 PWP2Q15269 919 aaKnown RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 MEA1Q16626 185 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 KCNV1Q6PIU1 500 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 CYP26C1Q6V0L0 522 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 SLC35F6Q8N357 371 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 NEK11Q8NG66 645 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 LENG1Q96BZ8 264 aaPredicted RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 CEP170P1Q96L14 293 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 DRC1Q96MC2 740 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 ST6GALNAC4Q9H4F1 302 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 VTA1Q9NP79 307 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 AGPAT3Q9NRZ7 376 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 FAM184BQ9ULE4 1060 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 RPL13P26373 211 aaKnown RBP13.29□□□□□ -0.28
HDAC6-230ENST00000488543 STAT5BP51692 787 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 NCKAP1LP55160 1127 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 ARHGAP1Q07960 439 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 OTUD6AQ7L8S5 288 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 IQCDQ96DY2 449 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 ABHD16BQ9H3Z7 469 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 RNF216Q9NWF9 866 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-230ENST00000488543 RNF186Q9NXI6 227 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 SLC5A4Q9NY91 659 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 ARMCX3Q9UH62 379 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-230ENST00000488543 SEPT9Q9UHD8 586 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-230ENST00000488543 TUBB4AP04350 444 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 HOXC6P09630 235 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 RHOXF2BP0C7M4 288 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 OAS2P29728 719 aaKnown RBP13.29□□□□□ -0.28
HDAC6-230ENST00000488543 ALCAMQ13740 583 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 FAM102BQ5T8I3 360 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 BSNDQ8WZ55 320 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 PNKPQ96T60 521 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 RHOXF2Q9BQY4 288 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 GBP3Q9H0R5 595 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 MMRN2Q9H8L6 949 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 XPNPEP1Q9NQW7 623 aa13.29□□□□□ -0.28
HDAC6-230ENST00000488543 FAM207AQ9NSI2 230 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-230ENST00000488543 RBM47A0AV96 593 aaKnown RBP13.28□□□□□ -0.28
HDAC6-230ENST00000488543 NOL4O94818 638 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 RGS2P41220 211 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 PEX3P56589 373 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 GTF2BQ00403 316 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 KCNH2Q12809 1159 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 MTERF2Q49AM1 385 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 DPY19L2P1Q6NXN4 242 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 AFG1LQ8WV93 481 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 BAP1Q92560 729 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 GLG1Q92896 1179 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 CYP26B1Q9NR63 512 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 MYH10P35580 1976 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 EPB41P11171 864 aaKnown RBP13.28□□□□□ -0.28
HDAC6-230ENST00000488543 FLT3LGP49771 235 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 XKR3Q5GH77 459 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 HAUS6Q7Z4H7 955 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 SLC9A9Q8IVB4 645 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 GOLGA1Q92805 767 aa13.28□□□□□ -0.28
HDAC6-230ENST00000488543 METTL14Q9HCE5 456 aaKnown RBP13.28□□□□□ -0.28
HDAC6-230ENST00000488543 GOLGA6L9A6NEM1 432 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 SLC16A4O15374 487 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 HNRNPH3P31942 346 aaKnown RBP13.27□□□□□ -0.29
HDAC6-230ENST00000488543 FCGRTP55899 365 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 CHMP4BP1P59074 171 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 SP3Q02447 781 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 PRKCZQ05513 592 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 HS2ST1Q7LGA3 356 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 GOLGA5Q8TBA6 731 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 SLC35C1Q96A29 364 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 ACCSQ96QU6 501 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 CEP89Q96ST8 783 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 MKNK1Q9BUB5 465 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 LSM14BQ9BX40 385 aaKnown RBP13.27□□□□□ -0.29
HDAC6-230ENST00000488543 EDEM3Q9BZQ6 932 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 REXO2Q9Y3B8 237 aaKnown RBP13.27□□□□□ -0.29
HDAC6-230ENST00000488543 SIP14410 1827 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 TISP43B9A030 160 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 H3BQF6 201 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 OATP04181 439 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 ZNF865P0CJ78 1059 aaPredicted RBP13.27□□□□□ -0.29
HDAC6-230ENST00000488543 NPTX2P47972 431 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 OLFML2BQ68BL8 750 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 FAM186BQ8IYM0 893 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 GPR161Q8N6U8 529 aaKnown RBP13.27□□□□□ -0.29
HDAC6-230ENST00000488543 TMEM161BQ8NDZ6 487 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms