RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 TMEM199Q8N511 208 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 LRRC15Q8TF66 581 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 DHX38Q92620 1227 aaKnown RBP11.39□□□□□ -0.59
SKA1-204ENST00000488454 STAMQ92783 540 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 CCDC47Q96A33 483 aaKnown RBP11.39□□□□□ -0.59
SKA1-204ENST00000488454 PAGE5Q96GU1 130 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 NLRP4Q96MN2 994 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 TIGD1Q96MW7 591 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 CTAGE1Q96RT6 745 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 LBHD1Q9BQE6 289 aaPredicted RBP11.39□□□□□ -0.59
SKA1-204ENST00000488454 NOC4LQ9BVI4 516 aaKnown RBP11.39□□□□□ -0.59
SKA1-204ENST00000488454 CELF4Q9BZC1 486 aaKnown RBP11.39□□□□□ -0.59
SKA1-204ENST00000488454 GCOM2Q9BZD3 368 aaPredicted RBP11.39□□□□□ -0.59
SKA1-204ENST00000488454 PPP1R12CQ9BZL4 782 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 C17orf75Q9HAS0 396 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 GPRC5CQ9NQ84 441 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 XPNPEP1Q9NQW7 623 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 KBTBD4Q9NVX7 518 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 LARSQ9P2J5 1176 aaKnown RBP11.39□□□□□ -0.59
SKA1-204ENST00000488454 TBX21Q9UL17 535 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 ODF2LQ9ULJ1 636 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 COL4A3BPQ9Y5P4 624 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 TRPV2Q9Y5S1 764 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 MYH9P35579 1960 aaKnown RBP11.39□□□□□ -0.59
SKA1-204ENST00000488454 NPHP3-ACAD11A0A0J9YXS1 232 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 TRIM43BA6NCK2 446 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 CCDC169A6NNP5 214 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 SFI1A8K8P3 1242 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 ACTN4O43707 911 aaKnown RBP11.38□□□□□ -0.59
SKA1-204ENST00000488454 NR1I2O75469 434 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 MYL1P05976 194 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 CTSHP09668 335 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 IDEP14735 1019 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 LIG1P18858 919 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 CYP2C18P33260 490 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 RGS19P49795 217 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 CRYBB1P53674 252 aaPredicted RBP11.38□□□□□ -0.59
SKA1-204ENST00000488454 SMTNP53814 917 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 CCL23P55773 120 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 ASIC1P78348 528 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 RBL2Q08999 1139 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 DMP1Q13316 513 aaPredicted RBP11.38□□□□□ -0.59
SKA1-204ENST00000488454 SNW1Q13573 536 aaKnown RBP11.38□□□□□ -0.59
SKA1-204ENST00000488454 GIT2Q14161 759 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 KIZQ2M2Z5 673 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 TRIM71Q2Q1W2 868 aaKnown RBP11.38□□□□□ -0.59
SKA1-204ENST00000488454 ODR4Q5SWX8 454 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 ZNF618Q5T7W0 954 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 SH3RF1Q7Z6J0 888 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 ZNF410Q86VK4 478 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 MYCT1Q8N699 235 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 LINC01465Q8N7H1 131 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 ENGASEQ8NFI3 743 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 DEPTORQ8TB45 409 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 WNT8BQ93098 351 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 TRIM43Q96BQ3 446 aaPredicted RBP11.38□□□□□ -0.59
SKA1-204ENST00000488454 PPP1R16BQ96T49 567 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 C7orf25Q9BPX7 421 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 INO80BQ9C086 356 aaPredicted RBP11.38□□□□□ -0.59
SKA1-204ENST00000488454 PARVGQ9HBI0 331 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 POLD4Q9HCU8 107 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 DACT1Q9NYF0 836 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 CDY2AQ9Y6F7 541 aa11.38□□□□□ -0.59
SKA1-204ENST00000488454 LRRIQ4A6NIV6 560 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 GPR32O75388 356 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 MBD3O95983 291 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 CHRNA1P02708 482 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 IQCF3P0C7M6 154 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 PLS3P13797 630 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 GAP43P17677 238 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 GLRA2P23416 452 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 NAMPTP43490 491 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 PHKA2P46019 1235 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 GPC3P51654 580 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 PEX3P56589 373 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 NCBP1Q09161 790 aaKnown RBP11.37□□□□□ -0.59
SKA1-204ENST00000488454 HERC4Q5GLZ8 1057 aaPredicted RBP11.37□□□□□ -0.59
SKA1-204ENST00000488454 FAM26DQ5JW98 314 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 KSR1Q8IVT5 923 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 ZBTB8OSQ8IWT0 167 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 GRAMD1CQ8IYS0 662 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 RPUSD2Q8IZ73 545 aaKnown RBP11.37□□□□□ -0.59
SKA1-204ENST00000488454 USP38Q8NB14 1042 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 RNF149Q8NC42 400 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 ASAP3Q8TDY4 903 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 ZNF668Q96K58 619 aaPredicted RBP11.37□□□□□ -0.59
SKA1-204ENST00000488454 PHOX2BQ99453 314 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 REEP2Q9BRK0 252 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 TRIM9Q9C026 710 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 C2orf40Q9H1Z8 148 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 PANK4Q9NVE7 773 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 ZMYND8Q9ULU4 1186 aaPredicted RBP11.37□□□□□ -0.59
SKA1-204ENST00000488454 TCHHQ07283 1943 aa11.37□□□□□ -0.59
SKA1-204ENST00000488454 A0A087WZ62 844 aa11.36□□□□□ -0.59
SKA1-204ENST00000488454 H0YCG3 227 aa11.36□□□□□ -0.59
SKA1-204ENST00000488454 SMC2O95347 1197 aa11.36□□□□□ -0.59
SKA1-204ENST00000488454 SYN1P17600 705 aa11.36□□□□□ -0.59
SKA1-204ENST00000488454 EIF4BP23588 611 aaKnown RBP11.36□□□□□ -0.59
SKA1-204ENST00000488454 RFC2P35250 354 aa11.36□□□□□ -0.59
SKA1-204ENST00000488454 MLLT1Q03111 559 aaPredicted RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms