RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CNTD1Q8N815 330 aa8.17□□□□□ -1.1
USP40-213ENST00000483216 GIMAP8Q8ND71 665 aaPredicted RBP8.17□□□□□ -1.1
USP40-213ENST00000483216 DNERQ8NFT8 737 aa8.17□□□□□ -1.1
USP40-213ENST00000483216 GNRHR2Q96P88 292 aa8.17□□□□□ -1.1
USP40-213ENST00000483216 FDXACB1Q9BRP7 624 aaPredicted RBP8.17□□□□□ -1.1
USP40-213ENST00000483216 C14orf93Q9H972 538 aaKnown RBP8.17□□□□□ -1.1
USP40-213ENST00000483216 EVLQ9UI08 416 aaPredicted RBP8.17□□□□□ -1.1
USP40-213ENST00000483216 CDY2AQ9Y6F7 541 aa8.17□□□□□ -1.1
USP40-213ENST00000483216 PATE3B3GLJ2 98 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 ALG1L2C9J202 215 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 IBSPP21815 317 aaPredicted RBP8.16□□□□□ -1.1
USP40-213ENST00000483216 GPR3P46089 330 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 GUCY2FP51841 1108 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 LGALS4P56470 323 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 BPIFB4P59827 614 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 CD69Q07108 199 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 TCTN3Q6NUS6 607 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 GLB1L2Q8IW92 636 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 TTC9BQ8N6N2 239 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 GPATCH3Q96I76 525 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 UIMC1Q96RL1 719 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 NELFAQ9H3P2 528 aa8.16□□□□□ -1.1
USP40-213ENST00000483216 WASHC2AQ641Q2 1341 aa8.15□□□□□ -1.1
USP40-213ENST00000483216 KRTAP9-7A8MTY7 169 aa8.15□□□□□ -1.1
USP40-213ENST00000483216 MTSS1O43312 755 aa8.15□□□□□ -1.1
USP40-213ENST00000483216 LY86O95711 162 aa8.15□□□□□ -1.1
USP40-213ENST00000483216 VSIG10L2P0DP72 767 aa8.15□□□□□ -1.1
USP40-213ENST00000483216 RPS19P39019 145 aaKnown RBP8.15□□□□□ -1.1
USP40-213ENST00000483216 KIR2DL3P43628 341 aa8.15□□□□□ -1.1
USP40-213ENST00000483216 ADAM8P78325 824 aa8.15□□□□□ -1.1
USP40-213ENST00000483216 SPIDRQ14159 915 aa8.15□□□□□ -1.1
USP40-213ENST00000483216 LMBR1LQ6UX01 489 aa8.15□□□□□ -1.1
USP40-213ENST00000483216 SHCBP1Q8NEM2 672 aa8.15□□□□□ -1.1
USP40-213ENST00000483216 TRIM8Q9BZR9 551 aa8.15□□□□□ -1.1
USP40-213ENST00000483216 ZFR2Q9UPR6 939 aaKnown RBP8.15□□□□□ -1.1
USP40-213ENST00000483216 NOP58Q9Y2X3 529 aaKnown RBP8.15□□□□□ -1.1
USP40-213ENST00000483216 A0A1W2PR48 441 aa8.14□□□□□ -1.11
USP40-213ENST00000483216 TOX4O94842 621 aa8.14□□□□□ -1.11
USP40-213ENST00000483216 JUNP05412 331 aaKnown RBP8.14□□□□□ -1.11
USP40-213ENST00000483216 MTHFD2P13995 350 aa8.14□□□□□ -1.11
USP40-213ENST00000483216 KLF1Q13351 362 aaPredicted RBP8.14□□□□□ -1.11
USP40-213ENST00000483216 KCNK18Q7Z418 384 aa8.14□□□□□ -1.11
USP40-213ENST00000483216 GPR135Q8IZ08 494 aa8.14□□□□□ -1.11
USP40-213ENST00000483216 ANKRD53Q8N9V6 530 aa8.14□□□□□ -1.11
USP40-213ENST00000483216 PIK3C3Q8NEB9 887 aa8.14□□□□□ -1.11
USP40-213ENST00000483216 TGFBRAP1Q8WUH2 860 aa8.14□□□□□ -1.11
USP40-213ENST00000483216 PLA2G12BQ9BX93 195 aa8.14□□□□□ -1.11
USP40-213ENST00000483216 EDARQ9UNE0 448 aa8.14□□□□□ -1.11
USP40-213ENST00000483216 SLC30A1Q9Y6M5 507 aa8.14□□□□□ -1.11
USP40-213ENST00000483216 FOXS1O43638 330 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 RAD17O75943 681 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 MGAT5Q09328 741 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 EFEMP1Q12805 493 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 RIN1Q13671 783 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 SAFB2Q14151 953 aaKnown RBP eCLIP8.13□□□□□ -1.11
USP40-213ENST00000483216 ACAP1Q15027 740 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 INAVAQ3KP66 663 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 TAS1R1Q7RTX1 841 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 AUTS2Q8WXX7 1259 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 PAWRQ96IZ0 340 aaKnown RBP8.13□□□□□ -1.11
USP40-213ENST00000483216 LOXL4Q96JB6 756 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 RPL10LQ96L21 214 aaKnown RBP8.13□□□□□ -1.11
USP40-213ENST00000483216 GPHA2Q96T91 129 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 AGO3Q9H9G7 860 aaKnown RBP8.13□□□□□ -1.11
USP40-213ENST00000483216 CD248Q9HCU0 757 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 DPP7Q9UHL4 492 aa8.13□□□□□ -1.11
USP40-213ENST00000483216 EVA1CP58658 441 aa8.12□□□□□ -1.11
USP40-213ENST00000483216 MEF2AQ02078 507 aaPredicted RBP8.12□□□□□ -1.11
USP40-213ENST00000483216 MTMR1Q13613 665 aa8.12□□□□□ -1.11
USP40-213ENST00000483216 ICAM4Q14773 271 aa8.12□□□□□ -1.11
USP40-213ENST00000483216 ADGRE4PQ86SQ3 457 aa8.12□□□□□ -1.11
USP40-213ENST00000483216 FUKQ8N0W3 1084 aa8.12□□□□□ -1.11
USP40-213ENST00000483216 Q8TCH9 128 aa8.12□□□□□ -1.11
USP40-213ENST00000483216 QRSL1Q9H0R6 528 aaKnown RBP8.12□□□□□ -1.11
USP40-213ENST00000483216 CCM2LQ9NUG4 571 aaPredicted RBP8.12□□□□□ -1.11
USP40-213ENST00000483216 KRTAP4-8A0A0G2JLE6 195 aa8.11□□□□□ -1.11
USP40-213ENST00000483216 TRIM75PA6NK02 468 aa8.11□□□□□ -1.11
USP40-213ENST00000483216 ZNF623O75123 536 aa8.11□□□□□ -1.11
USP40-213ENST00000483216 ALDH1A2O94788 518 aa8.11□□□□□ -1.11
USP40-213ENST00000483216 LTA4HP09960 611 aaKnown RBP8.11□□□□□ -1.11
USP40-213ENST00000483216 NCLP19338 710 aaKnown RBP8.11□□□□□ -1.11
USP40-213ENST00000483216 MUM1Q2TAK8 710 aa8.11□□□□□ -1.11
USP40-213ENST00000483216 SYDE2Q5VT97 1194 aa8.11□□□□□ -1.11
USP40-213ENST00000483216 KRT40Q6A162 431 aa8.11□□□□□ -1.11
USP40-213ENST00000483216 CBARPQ8N350 705 aaPredicted RBP8.11□□□□□ -1.11
USP40-213ENST00000483216 TSPEARQ8WU66 669 aa8.11□□□□□ -1.11
USP40-213ENST00000483216 OR14A2Q96R54 314 aa8.11□□□□□ -1.11
USP40-213ENST00000483216 SMPD4Q9NXE4 827 aa8.11□□□□□ -1.11
USP40-213ENST00000483216 PLA2G3Q9NZ20 509 aa8.11□□□□□ -1.11
USP40-213ENST00000483216 WASHC2CQ9Y4E1 1318 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 A0A1W2PRX2 142 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 B8ZZF3 427 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 MAGEA10P43363 369 aaPredicted RBP8.1□□□□□ -1.11
USP40-213ENST00000483216 MTNR1BP49286 362 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 WNT3AP56704 352 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 SRSF2Q01130 221 aaKnown RBP8.1□□□□□ -1.11
USP40-213ENST00000483216 FAM50AQ14320 339 aaKnown RBP8.1□□□□□ -1.11
USP40-213ENST00000483216 GRM7Q14831 915 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 ANO4Q32M45 955 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 SPATS1Q496A3 300 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms