RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 EPHB4P54760 987 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 NAP1L1P55209 391 aaKnown RBP13.28□□□□□ -0.28
PTPRF-212ENST00000477970 RTP1P59025 263 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 EPC2Q52LR7 807 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 NOL9Q5SY16 702 aaKnown RBP13.28□□□□□ -0.28
PTPRF-212ENST00000477970 VSIG10LQ86VR7 867 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 SYCP3Q8IZU3 236 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 SPIRE2Q8WWL2 714 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 EXOC7Q9UPT5 735 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 LCTP09848 1927 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 EXOC3O60645 756 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 KIF4AO95239 1232 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 EGFRP00533 1210 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 SCP2P22307 547 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 NLRX1Q86UT6 975 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 ZNF280CQ8ND82 737 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 RMDN3Q96TC7 470 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 NTPCRQ9BSD7 190 aaKnown RBP13.28□□□□□ -0.28
PTPRF-212ENST00000477970 SELENOOQ9BVL4 669 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 CTDP1Q9Y5B0 961 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-212ENST00000477970 PFASO15067 1338 aa13.27□□□□□ -0.28
PTPRF-212ENST00000477970 BHMG1C9JSJ3 638 aaPredicted RBP13.27□□□□□ -0.28
PTPRF-212ENST00000477970 DSG3P32926 999 aa13.27□□□□□ -0.28
PTPRF-212ENST00000477970 CYP2J2P51589 502 aa13.27□□□□□ -0.28
PTPRF-212ENST00000477970 CETN1Q12798 172 aa13.27□□□□□ -0.28
PTPRF-212ENST00000477970 DRAP1Q14919 205 aaPredicted RBP13.27□□□□□ -0.28
PTPRF-212ENST00000477970 RASGEF1CQ8N431 466 aa13.27□□□□□ -0.28
PTPRF-212ENST00000477970 LNX1Q8TBB1 728 aaPredicted RBP13.27□□□□□ -0.28
PTPRF-212ENST00000477970 MOV10L1Q9BXT6 1211 aaKnown RBP13.27□□□□□ -0.28
PTPRF-212ENST00000477970 TCEAL9Q9UHQ7 104 aa13.27□□□□□ -0.28
PTPRF-212ENST00000477970 DIS3Q9Y2L1 958 aaKnown RBP13.27□□□□□ -0.28
PTPRF-212ENST00000477970 DDX39AO00148 427 aaKnown RBP13.27□□□□□ -0.29
PTPRF-212ENST00000477970 PTPRAP18433 802 aa13.27□□□□□ -0.29
PTPRF-212ENST00000477970 VAMP7P51809 220 aa13.27□□□□□ -0.29
PTPRF-212ENST00000477970 RPS6KA1Q15418 735 aa13.27□□□□□ -0.29
PTPRF-212ENST00000477970 HSP90B2PQ58FF3 399 aa13.27□□□□□ -0.29
PTPRF-212ENST00000477970 C8orf74Q6P047 294 aa13.27□□□□□ -0.29
PTPRF-212ENST00000477970 KSR1Q8IVT5 923 aa13.27□□□□□ -0.29
PTPRF-212ENST00000477970 CPXCR1Q8N123 301 aa13.27□□□□□ -0.29
PTPRF-212ENST00000477970 USP38Q8NB14 1042 aa13.27□□□□□ -0.29
PTPRF-212ENST00000477970 XXYLT1Q8NBI6 393 aa13.27□□□□□ -0.29
PTPRF-212ENST00000477970 POLD4Q9HCU8 107 aa13.27□□□□□ -0.29
PTPRF-212ENST00000477970 RBM12Q9NTZ6 932 aaKnown RBP13.27□□□□□ -0.29
PTPRF-212ENST00000477970 TTC7AQ9ULT0 858 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-212ENST00000477970 CCNE2O96020 404 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 EAPPQ56P03 285 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-212ENST00000477970 ARHGEF16Q5VV41 709 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 HAUS6Q7Z4H7 955 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 MAP4K3Q8IVH8 894 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 TAF4BQ92750 862 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 CDHR1Q96JP9 859 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 IKZF4Q9H2S9 585 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 KIAA1217Q5T5P2 1943 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 BACH1O14867 736 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 POLR3GO15318 223 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-212ENST00000477970 EIF2AK2P19525 551 aaKnown RBP13.26□□□□□ -0.29
PTPRF-212ENST00000477970 GJB7Q6PEY0 223 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 KIFAP3Q92845 792 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 ZFP91Q96JP5 570 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-212ENST00000477970 CREBZFQ9NS37 354 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 RNF146Q9NTX7 359 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 HSPBP1Q9NZL4 362 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 ADAM21Q9UKJ8 722 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 FTCDO95954 541 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 MYBL2P10244 700 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 CXCR5P32302 372 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 UGCGQ16739 394 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 C1orf220Q5T0J3 134 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 IFT20Q8IY31 132 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 SCFD2Q8WU76 684 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 RFFLQ8WZ73 363 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 DMGDHQ9UI17 866 aaKnown RBP13.26□□□□□ -0.29
PTPRF-212ENST00000477970 PCDHA10Q9Y5I2 948 aa13.26□□□□□ -0.29
PTPRF-212ENST00000477970 SYF2O95926 243 aaKnown RBP13.25□□□□□ -0.29
PTPRF-212ENST00000477970 GTF2H1P32780 548 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 TNNC1P63316 161 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 NBPF12Q5TAG4 269 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-212ENST00000477970 OTUD6AQ7L8S5 288 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 MREGQ8N565 214 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 ATG4CQ96DT6 458 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 HES6Q96HZ4 224 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 KCNG1Q9UIX4 513 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 ZNF214Q9UL59 606 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-212ENST00000477970 SAMM50Q9Y512 469 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 STBD1O95210 358 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 CLUL1Q15846 466 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 PHLDB3Q6NSJ2 640 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 GPIHBP1Q8IV16 184 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 FBXL18Q96ME1 805 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 PDLIM7Q9NR12 457 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 COQ4Q9Y3A0 265 aa13.25□□□□□ -0.29
PTPRF-212ENST00000477970 CCDC188H7C350 402 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 ATP9AO75110 1047 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 TRIM49P0CI25 452 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 TRIM49CP0CI26 452 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 KCNA2P16389 499 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 PPATQ06203 517 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 ALS2CLQ60I27 953 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 TMEM161BQ8NDZ6 487 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 TMC2Q8TDI7 906 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms